PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34272.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 525aa    MW: 56801.7 Da    PI: 6.8136
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34272.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25.2e-07199219526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+ f++ G+C+ Gd C +aHg
  KHN34272.1 199 PCPEFRK-GFCSKGDACDYAHG 219
                 8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.208.0E-11170IPR020683Ankyrin repeat-containing domain
CDDcd002041.25E-9189No hitNo description
SuperFamilySSF484037.93E-10169IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.381165IPR020683Ankyrin repeat-containing domain
PfamPF136376.8E-5346No hitNo description
PROSITE profilePS5008812.1293065IPR002110Ankyrin repeat
SMARTSM002480.00263062IPR002110Ankyrin repeat
PROSITE profilePS5010313.319194221IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5194220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4199221IPR000571Zinc finger, CCCH-type
SMARTSM003565.4229251IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MIAAMFGSKS VLSYILGTGR VDVNRACGSD GATALHCAVA GGSSASLEVI KLLLDASADV  60
STVDANGNRS CDLIFSVSNG VFNSRKRILQ AVLEGADGID EACLRFEEAV GQMEKQQQQD  120
VDALQVSKDG TEKKDYPVDL SLPDIKNGIY SSDEFRMYTF KVRPCSRAYS HDWTECPFVH  180
PGENARRRDP RRYQYSCVPC PEFRKGFCSK GDACDYAHGI FECWLHPAQY KTRLCKETGC  240
TRRVCFFAHN VEDLRPVYAS TGSAMPSPRS YSVSSPPLDP FTLGSPSALI PPASSPPLTP  300
SGGSSPAGGT MWHSQIHVAV PTLQLPQSRL KSALNARDVE LDMELLGIEN HGCLMQQLMM  360
EGTAGLSSPS NWNNSMPNSP SLCDYTGDFN RLSGVQPTNL EDVFGSQIQS PARIQVHQNV  420
NQQLRGYPSN LYNSSVIGSP SFRVDPSGAA AAMALNPRNA AFANRSQSFM VNGDTEFPSP  480
ATSTAAKPST FSGWGPSDGK LDWSIRGDEL KKPSKSSSVG FLKQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34272.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028188087.10.0zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ41e-164C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A445I4K00.0A0A445I4K0_GLYSO; Zinc finger CCCH domain-containing protein 66 isoform B
STRINGGLYMA11G27130.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-141C3H family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]