PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34391.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 101aa    MW: 11896.1 Da    PI: 10.0619
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34391.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS104.91.1e-322100275374
        GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                 lp+ + +r+k+E++++++ei+n+v+ceg  r erhe++ +Wr+r+++aGF+++p++   ++qak  l k k  +gy+v ee+g+lvlgWk+rp+v+vS+
  KHN34391.1   2 LPKYDTKRAKMEQFYFAEEIKNIVSCEGPLRMERHERVDQWRRRMSRAGFQAAPIKM--VAQAKQWLLKNKvCEGYTVVEEKGCLVLGWKSRPIVAVSC 98 
                 6788899************************************************75..55666666666668************************** PP

        GRAS 373 Wr 374
                 W+
  KHN34391.1  99 WK 100
                 *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.573181IPR005202Transcription factor GRAS
PfamPF035144.0E-302100IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MLPKYDTKRA KMEQFYFAEE IKNIVSCEGP LRMERHERVD QWRRRMSRAG FQAAPIKMVA  60
QAKQWLLKNK VCEGYTVVEE KGCLVLGWKS RPIVAVSCWK C
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34391.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-97AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525665.11e-67scarecrow-like protein 21
RefseqXP_028231600.11e-67scarecrow-like protein 21
TrEMBLA0A1B1WAJ06e-68A0A1B1WAJ0_LOTJA; Required for arbuscule development 1
STRINGGLYMA05G03020.15e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2545633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-26scarecrow-like 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]