PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34454.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 369aa    MW: 41245.7 Da    PI: 4.6407
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34454.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.44.4e-30271692128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgyWk 84 
                 p G++F+P+d el+ e+L++k+   +    + ++e+i++++    i++++P++Lp  +k++ + ++fF+++ ++yatg+rk+r+         ++ +W+
  KHN34454.1  27 PLGVKFDPSDVELL-EHLAAKCGIGNtqqhMFINEFIPTLEgdqgICYTHPENLP-GAKKDGSYVHFFHRTTNAYATGQRKRRKihhqqgltEEHVRWH 123
                 89************.999999877663444223334554423445**********.556778899******************86777777444788** PP

         NAM  85 atgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128
                 +tgk+k++++ +g+++g kk++v+y  ++++g+   k++Wvmh+y+l
  KHN34454.1 124 KTGKTKAIIE-DGAHKGFKKIMVLYVRSSENGSrsyKSNWVMHQYHL 169
                 **********.999***********655555544449********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-3418188IPR003441NAC domain
PROSITE profilePS5100528.11326188IPR003441NAC domain
PfamPF023651.9E-1227169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MCCCYIEPLE FTASGIYSNS TEWPGFPLGV KFDPSDVELL EHLAAKCGIG NTQQHMFINE  60
FIPTLEGDQG ICYTHPENLP GAKKDGSYVH FFHRTTNAYA TGQRKRRKIH HQQGLTEEHV  120
RWHKTGKTKA IIEDGAHKGF KKIMVLYVRS SENGSRSYKS NWVMHQYHLG TVEEEKEGEY  180
VVSKIFCQQQ KQTEKNEGNP MAEDPDNIIS RTGPRTPKPN PPNPPRAGKS VDCDDNIDET  240
VLLSSALDTK TIPGESHAPQ SDIQDQDFTG NAAWLAGESQ AEESTKYDGC DDILLCKEIL  300
DSSAILNDPG LDSTNLEDIA GYATQRARND NESCGISVLD SLELDTPDFD LSSLYFCSQD  360
SILDWMDRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34454.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0980152e-91BT098015.1 Soybean clone JCVI-FLGm-26B21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604012.10.0SUPPRESSOR OF GAMMA RESPONSE 1
RefseqXP_028216994.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like
TrEMBLA0A0B2RQ880.0A0A0B2RQ88_GLYSO; NAC domain-containing protein 8
STRINGGLYMA19G08510.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.18e-69NAC family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]