PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN34587.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 261aa MW: 28349.6 Da PI: 6.9037

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN34587.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.9	2.4e-33	35	89	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl KHN34587.1 35 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 89 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.884	32	92	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-32	33	90	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.05E-17	34	89	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-26	35	90	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-7	37	88	IPR001005	SANT/Myb domain
Pfam	PF14379	8.9E-25	123	169	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MVPHKSQGGA EQLANAGVLG GSAVKTAAPS GGSGKQRLRW TSDLHDRFVD AITQLGGPDR 60 ATPKGVLRVM GVPGLTIYHV KSHLQKYRLA KYLPESPADG KDPKDEKRMS GDSISGADSS 120 SGMPINDALR MQMEVQKRLH EQLEVQKQLQ MRIEAQGKYL QKIIEEQQKL GSTLTTSETL 180 PLSHDKQNHP QSEASGSSDA LASTVSPLKK QRIDDGSKEG FTASQVRKND NVGQLDPNLY 240 DDAGFGFDLE TKKDEDNESG Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-23	34	92	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-23	34	92	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-23	34	92	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-23	34	92	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-23	34	92	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-23	34	92	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-23	34	92	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-23	34	92	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN34587.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ007311	0.0	HQ007311.1 Glycine max cultivar Jidou11 MYB transcription factor (PHR1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001276140.2	0.0	MYB-CC domain-containing transcription factor PHR30
Refseq	XP_006604294.1	0.0	MYB-CC domain-containing transcription factor PHR30 isoform X1
Refseq	XP_028218691.1	0.0	myb family transcription factor PHL7-like isoform X1
Refseq	XP_028218692.1	0.0	myb family transcription factor PHL7-like isoform X1
Swissprot	Q9SJW0	1e-71	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A445FFF9	0.0	A0A445FFF9_GLYSO; Myb family transcription factor PHL7 isoform B
TrEMBL	I1N8J6	0.0	I1N8J6_SOYBN; Uncharacterized protein
STRING	GLYMA19G30220.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13013	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	7e-64	G2-like family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]