PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34716.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-X1
Protein Properties Length: 520aa    MW: 58720.9 Da    PI: 8.5814
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34716.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.93.4e-067392120
    zf-NF-X1  1 CGkHkCqklCHeGpCppCpq 20
                CG+H C++ C+ G+CppC++
  KHN34716.1 73 CGRHACKRRCCDGDCPPCSE 92
                ******************85 PP
2zf-NF-X118.25.4e-0694118119
    zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                 CG      +HkC ++CH+GpC pCp
  KHN34716.1  94 CGrklrckNHKCPSPCHRGPCAPCP 118
                 777777779***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060081.04E-91059No hitNo description
SMARTSM004380.162040IPR000967Zinc finger, NF-X1-type
PfamPF014220.00172039IPR000967Zinc finger, NF-X1-type
CDDcd060087.16E-963111No hitNo description
SMARTSM004380.00927392IPR000967Zinc finger, NF-X1-type
PfamPF014224.7E-47391IPR000967Zinc finger, NF-X1-type
CDDcd060081.02E-1190138No hitNo description
PfamPF014220.001794118IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0079100119IPR000967Zinc finger, NF-X1-type
SMARTSM004381.9248275IPR000967Zinc finger, NF-X1-type
PfamPF014220.083248258IPR000967Zinc finger, NF-X1-type
SMARTSM004380.067285303IPR000967Zinc finger, NF-X1-type
PfamPF014221.2287302IPR000967Zinc finger, NF-X1-type
SMARTSM0043869348370IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0016874Molecular Functionligase activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MPCDAPVQLC GATCDKMLPC GYHRCPERCH RGQCVETCRV VVKKSCRCGS LKKDVPCYQD  60
LACERKCQRM RDCGRHACKR RCCDGDCPPC SEICGRKLRC KNHKCPSPCH RGPCAPCPIM  120
VTISCACGET RFEVPCGTEM DNKPPRCPKP CPITPLCRHA SNIKGVSIPI LLWCHGAKPP  180
PNPEFTLKPK KKKIIQQSES VPGTPCPPCP ELVWRSCVGK HIGAERMMVC SDKSQFSCEN  240
LCGNPLPCGN HYCTKTCHAL ENQLQGSQPC EDCYLSCQKE REPACPHHCP RRCHPGDCPP  300
CKVLIKRSCH CGAMVHVFEC LYYNSLSAKG QETVRSCGGP CHRKLPNCTH LCPETCHSGQ  360
CTNAEKCCKK VTVRCKCHTL KKEWVCQDVQ AAYHLAGCHP RDIPKNQFGI GLIPCNSDCN  420
SKVQVVESEL QLRKTRVTEV QEPDVEKSVR KRRKRREQVL ESKETSKLQK IISRMKRLLL  480
FVFILVILLA ATYYGYKGLL WLNDWMNEVD ERRQRYSRIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1449455RKRRKRR
2449456RKRRKRRE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34716.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150377e-76AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028197770.10.0NF-X1-type zinc finger protein NFXL2-like
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0B2RJF00.0A0A0B2RJF0_GLYSO; NF-X1-type zinc finger protein NFXL2
STRINGGLYMA11G35320.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]