PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34754.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 237aa    MW: 26902.4 Da    PI: 9.5625
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34754.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.7e-0792111120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++Cp C+k+F+r  nL+ H+
  KHN34754.1  92 FSCPVCHKTFNRYNNLQMHM 111
                 89*****************9 PP
2zf-C2H212.10.0006176198123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C +Cgk+   k + ++H +++
  KHN34754.1 176 FTCRKCGKPLAVKGDWRTHEKNC 198
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.48E-687114No hitNo description
SMARTSM003550.04492114IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.51292119IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.3E-692111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SuperFamilySSF576676.16E-5161196No hitNo description
SMARTSM00355160176196IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MNQNQLQPLP LLSSFLGSSH EESLLQNQNE NPNNACHGQV EDVTVALHIG LPDHSSGSNS  60
TNNHGFVNAT TQVPNNYWIP TQEQILIGFS HFSCPVCHKT FNRYNNLQMH MWGHGSQYRR  120
GPDSLKRTHP RPLLDLPCYC CARGCKNNIE HARAKPLKDF RTLQTHYKRK HGSKPFTCRK  180
CGKPLAVKGD WRTHEKNCGK RWLCICGSDF KHKRSLKDHI KAFGFGHTPF SSSSDGM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122127DSLKRT
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34754.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118080.0AJ311808.1 Glycine max partial mRNA for WIP1 protein (WIP1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542356.21e-179protein TRANSPARENT TESTA 1
RefseqXP_028197103.11e-179protein TRANSPARENT TESTA 1-like
SwissprotQ8VWG31e-96TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A0B2RR971e-178A0A0B2RR97_GLYSO; Protein TRANSPARENT TESTA 1
TrEMBLI1LVX81e-178I1LVX8_SOYBN; Uncharacterized protein
STRINGGLYMA13G01720.11e-179(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.17e-96C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]