PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34831.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 200aa    MW: 23141 Da    PI: 9.5318
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34831.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.66.6e-28958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krienksnrq+tfskRr+g++KKA ELS+LCda+ a++ifsstgklye +
  KHN34831.1  9 KRIENKSNRQITFSKRRKGLMKKARELSILCDAKLALLIFSSTGKLYELC 58
                79*********************************************966 PP
2K-box48.24.8e-171081664199
       K-box  41 edLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  +Le Ls+ +L++Le+ ++++l++iRs K++l++e++e+l+kke+ l++en+ L+k+++
  KHN34831.1 108 SELEHLSVTDLMELEKLVHSALSRIRSAKMRLMMESVENLKKKEHILRNENELLEKQVK 166
                 68*****************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.025161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-29175IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-35160IPR002100Transcription factor, MADS-box
CDDcd002651.96E-33270No hitNo description
PRINTSPR004042.6E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.7E-251056IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.63281171IPR002487Transcription factor, K-box
PfamPF014865.7E-15100165IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0010048Biological Processvernalization response
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGKKKLEIKR IENKSNRQIT FSKRRKGLMK KARELSILCD AKLALLIFSS TGKLYELCNG  60
DSLAEVVQRY WDNLGASGTD TKGLRFEIAD IWSDEAFSQL VQSHFGVSEL EHLSVTDLME  120
LEKLVHSALS RIRSAKMRLM MESVENLKKK EHILRNENEL LEKQVKMYTK SCTESYMSIL  180
SFYVVNILFF YSILELSINK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-18161161MEF2C
5f28_B2e-18161161MEF2C
5f28_C2e-18161161MEF2C
5f28_D2e-18161161MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34831.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2525680.0EU252568.1 Glycine max flowering locus C-like protein 1 (FLCL1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524905.11e-116MADS-box protein FLOWERING LOCUS C isoform X2
RefseqXP_028232719.11e-116MADS-box protein FLOWERING LOCUS C-like isoform X2
TrEMBLA0A0B2RJT71e-142A0A0B2RJT7_GLYSO; MADS-box protein FBP24
TrEMBLI1K3N41e-142I1K3N4_SOYBN; Uncharacterized protein
STRINGGLYMA05G28130.11e-143(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.28e-41AGAMOUS-like 31
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]