PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34865.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 568aa    MW: 63441.6 Da    PI: 6.7357
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34865.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.37.4e-28312365256
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 ++++WtpeLH++Fv+aveqL G+++A+P++ile+mkv+gLt+++v+SHLQkYR++
  KHN34865.1 312 KKVDWTPELHKKFVKAVEQL-GIDQAIPSRILEIMKVEGLTRHNVASHLQKYRIH 365
                 689*****************.********************************86 PP
2Response_reg28.76.5e-11201261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                   vl+ + + + +  +r+ le  +y +v ++ d  eal  l  +   +++ ++ ++ +  + G+++l++     ++lp i+ +  +  +++ +++ +Ga
    KHN34865.1  20 VLLLEGDSSSAAEIREQLEAMDY-KVSTFYDENEALSALSSSPkgFHVAIVEVSTSCsLGGFKFLENA----KDLPTIMTSKDQCLNTMMKCIALGA 111
                   67777888889999*********.***************888878********999988999998753....4689999999999************ PP

                   SEEEESS--HHHHHH CS
  Response_reg  95 kdflsKpfdpeelvk 109
                    +flsKp ++++l +
    KHN34865.1 112 VEFLSKPLSEDKLKN 126
                   ***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.2E-1716139No hitNo description
SuperFamilySSF521721.71E-1516140IPR011006CheY-like superfamily
SMARTSM004480.003318128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011020.31119132IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.7E-820126IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.35E-921131No hitNo description
PROSITE profilePS5129417.447308367IPR017930Myb domain
SuperFamilySSF466894.21E-18310367IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-27310368IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-25312366IPR006447Myb domain, plants
PfamPF002491.4E-7314363IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MVCTANDLQG WKDFPKGLRV LLLEGDSSSA AEIREQLEAM DYKVSTFYDE NEALSALSSS  60
PKGFHVAIVE VSTSCSLGGF KFLENAKDLP TIMTSKDQCL NTMMKCIALG AVEFLSKPLS  120
EDKLKNIWQH VVHKAFNSGE NVLSESLKPV KESVESMLQL QTDIGQDKSR ISIDLENVSR  180
FSDNDHEQSA VCDKYPAPST PQLKQGTRLL DDGDCHEQTN CSTEKESGEH DRECKSVETS  240
CGNLNAESSP QPREPDKTLI REEDDFANVS KGESAVSLNP HNKKFLSNAD GNTSPNKTGV  300
LNDSCEIKAN RKKVDWTPEL HKKFVKAVEQ LGIDQAIPSR ILEIMKVEGL TRHNVASHLQ  360
KYRIHKRQSA PREEDRKWHN QGDAMQRNYY MQRPIMAYPP YHSHHTLSPA PIYPMWGQPG  420
SQTAGVQIWG HPGYPMWHPT ESWHWKPYPG VHVDAWGCPL VPPPQAPCFP YNQNTPGLHN  480
PKAVDYRFSM PRSSFEHHPA EEVVDKVVKE AMSQPWLPLP LGLKPPSMDS VLAELSKQGI  540
PSIPLGNKGS STPKPRRDVR PTPPPGPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-17311365155Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34865.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-136AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590603.10.0two-component response regulator-like APRR2 isoform X2
RefseqXP_028188739.10.0two-component response regulator-like APRR2 isoform X2
SwissprotQ6LA431e-142APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A445HWX50.0A0A445HWX5_GLYSO; Two-component response regulator-like APRR2 isoform G
STRINGGLYMA11G04441.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-139ARR-B family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]