PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN35087.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 434aa    MW: 48807.2 Da    PI: 6.3785
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN35087.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS428.16.8e-131104311374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl+ A++v++gdl++a+ +L+++s++as dgd+mqR+a+yf eALa r++r+++++ +al++++ +   +s+e+ ++klf+e+ P+lkfs++++N
  KHN35087.1  10 LIHLLLAGANFVATGDLQNANLTLEQISQHASLDGDTMQRIASYFSEALADRILRTWPGIHRALNSNRIP--MVSDEILVQKLFFELLPFLKFSYILTN 106
                 689*************************************************************999998..59************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaI+ea+ege++vH+iD+++  ++QW+aLlq L++R+egpp+l+iTgv++    +ke l +++++L++ Ae+l++pf+fn+ v ++le+l++e+L vk+
  KHN35087.1 107 QAIVEAMEGEKMVHVIDLNAAGPAQWIALLQVLSARSEGPPHLKITGVHH----QKEVLDQMAHKLTEEAEKLDIPFQFNP-VLSKLENLDFEKLGVKT 200
                 **************************************************....9**************************.799************** PP

        GRAS 199 gEalaVnlvlqlhrll.........................................................desvsleserdevLklvkslsPkvvv 240
                 gEala+++++qlh+ll                                                         ++s+s++s  +++L+++++lsPkv+v
  KHN35087.1 201 GEALAISSIMQLHSLLaldddasrrklpllsknsnaihlqkglltnqntlgdlldgyspspdsasasassspaSSSASMNS--ESFLNALWGLSPKVMV 297
                 ********************************************************************9998777777777..9*************** PP

        GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                 v+eq+ +hn  + +er++eal  y+a fd+le++++r+s +rik+E++l+g+ei+n++aceg er++rhe++ +W +rl+ +GF +vp+s++ + q ++
  KHN35087.1 298 VTEQDFNHNCLTMMERLAEALFSYAAYFDCLESTVSRASLDRIKLEKMLFGEEIKNIIACEGCERKKRHERMDRWIQRLDFSGFANVPISYYGMLQGRR 396
                 *************************************************************************************************** PP

        GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  l++++ +gy+++ee g ++++W++rpL++++aW+
  KHN35087.1 397 FLQTYGCEGYKMKEECGRVMMCWQERPLFFITAWT 431
                 **********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.5241411IPR005202Transcription factor GRAS
PfamPF035142.3E-12810431IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MKCEERGLVL IHLLLAGANF VATGDLQNAN LTLEQISQHA SLDGDTMQRI ASYFSEALAD  60
RILRTWPGIH RALNSNRIPM VSDEILVQKL FFELLPFLKF SYILTNQAIV EAMEGEKMVH  120
VIDLNAAGPA QWIALLQVLS ARSEGPPHLK ITGVHHQKEV LDQMAHKLTE EAEKLDIPFQ  180
FNPVLSKLEN LDFEKLGVKT GEALAISSIM QLHSLLALDD DASRRKLPLL SKNSNAIHLQ  240
KGLLTNQNTL GDLLDGYSPS PDSASASASS SPASSSASMN SESFLNALWG LSPKVMVVTE  300
QDFNHNCLTM MERLAEALFS YAAYFDCLES TVSRASLDRI KLEKMLFGEE IKNIIACEGC  360
ERKKRHERMD RWIQRLDFSG FANVPISYYG MLQGRRFLQT YGCEGYKMKE ECGRVMMCWQ  420
ERPLFFITAW TPRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-37243311381Protein SCARECROW
5b3h_A1e-37243310380Protein SCARECROW
5b3h_D1e-37243310380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN35087.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0950270.0BT095027.1 Soybean clone JCVI-FLGm-19K11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538672.10.0scarecrow-like protein 3
RefseqXP_028187455.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A445HVK60.0A0A445HVK6_GLYSO; Scarecrow-like protein 3
TrEMBLI1LG670.0I1LG67_SOYBN; Uncharacterized protein
STRINGGLYMA11G01850.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3592222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-178scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]