PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN35149.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 283aa    MW: 31959.9 Da    PI: 6.6811
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN35149.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.86e-191663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++lvd ++++G g+W++ +r  g++R++k+c++rw +yl
       KHN35149.1 16 KGPWSPEEDKILVDFIEKHGHGSWRALPRLAGLNRCGKSCRLRWTNYL 63
                     79********************************************97 PP
2Myb_DNA-binding51.71.9e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE++l+++++  lG++ W++Ia++++ gRt++++k+ w+++l
       KHN35149.1  69 RGKFSDEEEQLIINLHSVLGNK-WAAIASHLP-GRTDNEIKNLWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4731163IPR017930Myb domain
SuperFamilySSF466891.19E-3113110IPR009057Homeodomain-like
SMARTSM007172.4E-151565IPR001005SANT/Myb domain
PfamPF002495.0E-171663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-241770IPR009057Homeodomain-like
CDDcd001674.64E-121863No hitNo description
PROSITE profilePS5129426.3564118IPR017930Myb domain
SMARTSM007175.8E-1568116IPR001005SANT/Myb domain
PfamPF002492.4E-1569114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2771119IPR009057Homeodomain-like
CDDcd001672.89E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
VMMRTPISSD ESGLKKGPWS PEEDKILVDF IEKHGHGSWR ALPRLAGLNR CGKSCRLRWT  60
NYLRPDIKRG KFSDEEEQLI INLHSVLGNK WAAIASHLPG RTDNEIKNLW NTHLKKKLMQ  120
MGLDPVTHRP RTHHLNLLSN LQQILALIRL QSDANKLQLL QNIFEASNSD PLPDSSYSLL  180
NDVLGGLNNL HSNDLHNLYD GNSLSVQNFD QNLNGGRNAE PSPSSNSLPN LVSASPDRSP  240
VVKEAQNILV NSKDFSTSAF ELTWGDFMDE EETNQTYWKG FME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28141185108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN35149.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150437e-84AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538653.30.0transcription factor MYB92
RefseqXP_028188999.10.0transcription factor MYB92-like
SwissprotQ9SBF36e-80MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A445HV900.0A0A445HV90_GLYSO; Transcription factor MYB92
TrEMBLI1LFY00.0I1LFY0_SOYBN; Uncharacterized protein
STRINGGLYMA11G01150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.27e-81myb domain protein 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]