PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN35319.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 369aa    MW: 40385 Da    PI: 7.8285
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN35319.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.34e-11933226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                +++ C +++ t tCk+Gd+CkF H+
  KHN35319.1  9 GEKDCAHYMLTRTCKFGDSCKFDHP 33
                7889********************9 PP
2zf-CCCH35.31.9e-116086127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++++ C++f++t  Ck+G++CkF+H++
  KHN35319.1 60 PGEPDCPYFLKTQRCKFGSKCKFNHPK 86
                5789*********************96 PP
3zf-CCCH37.73.5e-12104128327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C f+++tG C+yG  CkF+H++
  KHN35319.1 104 EPPCAFYMKTGKCRYGTACKFHHPK 128
                 79*********************96 PP
4zf-CCCH406.7e-13181204326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 ++ C+f+++tG CkyG +C+++H+
  KHN35319.1 181 EVDCPFYMKTGSCKYGVSCRYNHP 204
                 689********************9 PP
5zf-CCCH39.11.2e-12265288326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 + +C+f+++tG Ck+G+rCk++H+
  KHN35319.1 265 QIECDFYMKTGVCKFGERCKYHHP 288
                 568********************8 PP
6zf-CCCH41.32.6e-13316339427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 ++C+++++tGtCk+G++CkF H+p
  KHN35319.1 316 VICPYYLKTGTCKFGATCKFDHPP 339
                 68********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.244735IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5734IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-4734IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-9933IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-41332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1875987IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-65986IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-96186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-56485IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-46584IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817101129IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-6101128IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9104128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6105129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5106127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408178206IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-7178205IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10181204IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5182205IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4184203IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.075262290IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6262289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-7264290IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-10266288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-5268288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004312340IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-7312339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6316339IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-11316339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-6317337IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MTIYPQRPGE KDCAHYMLTR TCKFGDSCKF DHPVWVPEGG IPDWKEVPNV VTSETPPERP  60
GEPDCPYFLK TQRCKFGSKC KFNHPKVSSE NADVSSGLPE RPSEPPCAFY MKTGKCRYGT  120
ACKFHHPKDI QIQLSDDLSQ NVAQTQTNSM MGGATGDTQP IKSLISPSLQ NSKGLPVRLG  180
EVDCPFYMKT GSCKYGVSCR YNHPDRNAIN PPIAGLGASI LPSSAANLNI GLLNPAVSAY  240
QAFEPRLSNP MVGIAETIYP QRPGQIECDF YMKTGVCKFG ERCKYHHPID RSALSLSKQA  300
TVKLTPAGLP RREGDVICPY YLKTGTCKFG ATCKFDHPPP GEVMEMAKSQ GTSANGEEAE  360
GDTSALEQL
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN35319.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352781e-116AC235278.1 Glycine max strain Williams 82 clone GM_WBb0048F23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545729.10.0zinc finger CCCH domain-containing protein 37
RefseqXP_028204321.10.0zinc finger CCCH domain-containing protein 37-like
SwissprotQ941Q31e-159C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A445GWR10.0A0A445GWR1_GLYSO; Zinc finger CCCH domain-containing protein 37
TrEMBLK7MCY10.0K7MCY1_SOYBN; Uncharacterized protein
STRINGGLYMA15G30265.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-162floral homeotic protein (HUA1)