PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN35482.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 226aa    MW: 25203.9 Da    PI: 10.0375
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN35482.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-132172155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  KHN35482.1 21 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 72
                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.02E-121976No hitNo description
PROSITE profilePS5088815.4592071IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-172085IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-132075IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-102172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-102677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550215.34E-5148219No hitNo description
Gene3DG3DSA:3.30.70.2605.6E-4150216No hitNo description
PROSITE profilePS516718.581150226IPR002912ACT domain
CDDcd048730.005151215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0016021Cellular Componentintegral component of membrane
GO:0016597Molecular Functionamino acid binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGRRKRRRTK SAKNKEEIEN QRMTHIAVER NRRKQMNEYL AVLRSLMPPS YVQRGDQASI  60
IGGAINFVKE LEQLLQCMKG QKRTKEGGFS DSSPFAEFFM FPQYSTRATQ SSSSSSKGYP  120
GTCEANNNIA RNHSWAVADI EVTLVDGHAN MKILSKKRPG LLLKMVVGLQ SLGLSILHLN  180
VTTVDDMVLT SVSVKVEEGC QLNTVDEIAA AVHQLSRTVQ EEAVFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
137RKRRR
238RKRRRT
32132RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN35482.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150364e-57AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544814.11e-167transcription factor bHLH96
RefseqXP_028198704.11e-167transcription factor bHLH96-like
SwissprotQ9C7T41e-85BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0B2RUJ11e-168A0A0B2RUJ1_GLYSO; Transcription factor bHLH96
STRINGGLYMA14G35560.11e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.18e-87bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]