PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN35841.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 325aa    MW: 36697.7 Da    PI: 9.9597
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN35841.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.52.1e-19182215134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 Cs C+ttkTplWR+gp g+ktLCnaCG+++rk +
  KHN35841.1 182 CSDCHTTKTPLWRSGPKGPKTLCNACGIRQRKAR 215
                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.38E-13176217No hitNo description
PROSITE profilePS5011412.756176212IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-19176227IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.6E-16180215IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.21E-14181213No hitNo description
PROSITE patternPS003440182207IPR000679Zinc finger, GATA-type
PfamPF003206.5E-17182215IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MIPTYRYSVS SPMPIDLNED HTHHVFSTSH QASSSSSSLS FSILFNPDHQ GQGGSCCHWE  60
SKHLQSDEEA QKIVPSSESW EHPVSEKDEN RSDLKLRVWK KEDKCENFQV EDNSTKWMPL  120
KMRMMRRMMV SDQTGFDTEG MISNSKQIKN EEKNPPLTPL GTDDSNNYNS SANHSKITVR  180
VCSDCHTTKT PLWRSGPKGP KTLCNACGIR QRKARRAIAV AATANGMNPV EAEKSQVKKG  240
NKLHSKGMKS KTKGAPHMKK KRKLGAKYRK RFGAFEDLTV RLSKNLALQK VFPPDEKEAA  300
ILLMALSYGL LHGFPTDRYV NYLDL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258263KKKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN35841.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014617452.20.0LOW QUALITY PROTEIN: GATA transcription factor 21
RefseqXP_028248690.10.0GATA transcription factor 21-like
TrEMBLA0A445IXI80.0A0A445IXI8_GLYSO; Putative GATA transcription factor 22
STRINGGLYMA09G07090.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.16e-17GATA transcription factor 16
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]