PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN35924.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

M-type_MADS

Protein Properties

Length: 185aa MW: 21190.5 Da PI: 10.3321

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN35924.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.1	7.3e-21	15	63	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ +nk+n qvtfskRr+gi+KKA+EL +LC+++ avi+ s+ ++++ + KHN35924.1 15 KKMSNKRNLQVTFSKRRTGIFKKASELTTLCGMNLAVIMSSPGNRVFSF 63 5689****************************************99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.6E-27	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.049	7	67	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-17	9	29	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-24	9	86	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.6E-21	17	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-17	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-17	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
IIKNTKGRQK KIEIKKMSNK RNLQVTFSKR RTGIFKKASE LTTLCGMNLA VIMSSPGNRV 60 FSFGSPSVDS VIQHYTAQGP PPLLNLELNE ASIDEHELHV HLNNLSDQIA AEKKHKKDLN 120 RMLNAAEEHV WFVMPIKSMN DAQLETYKKM LEELKTYANE KREKLLQRLP NTSMGVATLT 180 HDFRF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-15	9	81	3	75	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-15	9	81	3	75	Myocyte-specific enhancer factor 2B
1tqe_R	1e-15	9	81	3	75	Myocyte-specific enhancer factor 2B
1tqe_S	1e-15	9	81	3	75	Myocyte-specific enhancer factor 2B
6c9l_A	1e-15	9	81	3	75	Myocyte-specific enhancer factor 2B
6c9l_B	1e-15	9	81	3	75	Myocyte-specific enhancer factor 2B
6c9l_C	1e-15	9	81	3	75	Myocyte-specific enhancer factor 2B
6c9l_D	1e-15	9	81	3	75	Myocyte-specific enhancer factor 2B
6c9l_E	1e-15	9	81	3	75	Myocyte-specific enhancer factor 2B
6c9l_F	1e-15	9	81	3	75	Myocyte-specific enhancer factor 2B
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN35924.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006575280.1	1e-125	agamous-like MADS-box protein AGL62
Refseq	XP_028189624.1	1e-125	agamous-like MADS-box protein AGL62
TrEMBL	A0A0B2RUK8	1e-135	A0A0B2RUK8_GLYSO; Agamous-like MADS-box protein AGL62 (Fragment)
STRING	GLYMA02G35080.2	1e-124	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF35106	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	5e-33	AGAMOUS-like 62

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]