PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN36206.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 159aa MW: 17906.6 Da PI: 6.6207

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN36206.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	40.6	7.4e-13	8	37	1	30
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkf 30 +CaaCk+lrrkC+++Cv+apyfp ++p++ KHN36206.1 8 PCAACKFLRRKCTQECVFAPYFPPDNPQRE 37 7*********************99996543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.079	7	122	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.5E-11	8	37	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0004088	Molecular Function	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MSSSSNSPCA ACKFLRRKCT QECVFAPYFP PDNPQREQQE MFRSYEHQQQ QEFLRFSGGG 60 FDMGSASSAG GFSQVSPAAA SADQLSPSLA LGSFDNAYHM QQPQQEEPHH HHHHPHHIPL 120 EAQLLLPPQQ KQQTHHESQL PLHQQHSDNE ERRSVGPSC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN36206.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235183	1e-153	AC235183.1 Glycine max strain Williams 82 clone GM_WBb0008G09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006573622.1	1e-62	LOB domain-containing protein 36
Refseq	XP_014631594.1	1e-62	LOB domain-containing protein 36
Refseq	XP_014631595.1	1e-62	LOB domain-containing protein 36
Refseq	XP_014631596.1	1e-62	LOB domain-containing protein 36
TrEMBL	I1J947	3e-61	I1J947_SOYBN; Uncharacterized protein
STRING	GLYMA01G39060.2	5e-62	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	7e-17	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]