PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36319.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 548aa    MW: 61986 Da    PI: 7.5466
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36319.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.33.3e-12213269155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  KHN36319.1 213 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqGRKGRQ-GGYDMEEKAARAYDMAALKYWG 269
                 78*******************87776554446655.77******************98 PP
2AP2461.3e-14314363355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  KHN36319.1 314 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 363
                 9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-9213269IPR001471AP2/ERF domain
CDDcd000189.77E-16213277No hitNo description
SuperFamilySSF541711.9E-14213279IPR016177DNA-binding domain
SMARTSM003802.6E-21214283IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-13214278IPR001471AP2/ERF domain
PROSITE profilePS5103217.543214277IPR001471AP2/ERF domain
PRINTSPR003673.7E-6215226IPR001471AP2/ERF domain
CDDcd000181.10E-24312373No hitNo description
SuperFamilySSF541711.63E-17312372IPR016177DNA-binding domain
SMARTSM003801.2E-33313377IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-18313371IPR001471AP2/ERF domain
PROSITE profilePS5103219.177313371IPR001471AP2/ERF domain
PfamPF008472.3E-9314363IPR001471AP2/ERF domain
PRINTSPR003673.7E-6353373IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MNIGVPSHLH QTQPSSAAVE AVPPNFYHHT PLHNYGLYYE LEGEHVGMSS SLPIMPLKSN  60
ASLSGIEALS RSQAQEDISQ QQFSYYSTLR NQDVILEGSK HQLPCIAEDE NPGLKSWFSR  120
DFHARHAEES RMIVPLECNG GESGSIGSIT YGDLHSSNLS VSPTSGSSSV TSSPALTNTV  180
ATNTKKRWLE MVDQNQKQIV HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG  240
QGRKGRQGGY DMEEKAARAY DMAALKYWGP SSHINFPLEN YQNELEEMKN MTRQEYVAHL  300
RRKSSGFSRG ASMYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK  360
FRGVNAVTNF DITRYDVEKI MESNNLLSSE QAKRKREMDD GTRSEATVNQ KPSTYDHTQE  420
TILMQKRCKN QSEWKMVQFP CPQQLDQNQR IESCRTQPFS TDLDNMFRHQ VEERSNMGTH  480
LSNPSSLVTS LSSSREESPD KTSMPMLFGM PSTVSKLLAN VDSWDLSSNL RTALSMPQMP  540
IFAAWTDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36319.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573675.10.0AP2-like ethylene-responsive transcription factor ANT isoform X3
RefseqXP_028244835.10.0AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ84Z021e-142CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A445M5T10.0A0A445M5T1_GLYSO; AP2-like ethylene-responsive transcription factor CRL5 isoform B
TrEMBLK7K4R70.0K7K4R7_SOYBN; Uncharacterized protein
STRINGGLYMA01G40380.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-116AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]