PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36350.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 214aa    MW: 24698.8 Da    PI: 8.0808
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36350.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.9e-14115161455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L+el+P +      K  Ka++L + +eY+ksLq
  KHN36350.1 115 VHNLSERRRRDRINEKMKALQELIPRC-----NKSGKASMLDEPIEYLKSLQ 161
                 6*************************8.....5888999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-16109166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.431111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.73E-14114164No hitNo description
PfamPF000101.6E-11115161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-18115165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-13117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MRFFLCLHLT TLQSSILPSF LQLHCTEFLD LHFGNFHLLI GFFFSLNFMH VLSCVLMLLG  60
FTDLIAAFFE YSWVWVVGSE FVQKYVGEDV DFESPEAKKQ VRGSTSTKRS HAAEVHNLSE  120
RRRRDRINEK MKALQELIPR CNKSGKASML DEPIEYLKSL QLQVTVDASL QIPSVQVGLK  180
HFSDVVRTRS PIPCVNQCHY CIQIYNAFTL KVLF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119124ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311141e-111KT031114.1 Glycine max clone HN_CCL_148 bHLH transcription factor (Glyma10g04890.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014623005.11e-77transcription factor PIF1 isoform X2
TrEMBLA0A0B2RTG41e-158A0A0B2RTG4_GLYSO; Transcription factor PIF1
STRINGGLYMA02G19000.15e-77(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-32phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]