PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36372.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-X1
Protein Properties Length: 871aa    MW: 97218.3 Da    PI: 8.354
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36372.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X124.46.1e-08244262119
    zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                 CG H+C++lCH+G CppC+
  KHN36372.1 244 CGVHRCIELCHPGACPPCR 262
                 ******************7 PP
2zf-NF-X118.16.1e-06404423120
    zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                 CG+H C++ C+ G+CppC++
  KHN36372.1 404 CGRHACKRRCCDGDCPPCSE 423
                 ******************85 PP
3zf-NF-X117.49.8e-06425449119
    zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                 CG      +HkC ++CH+GpC pCp
  KHN36372.1 425 CGrklrckNHKCPSPCHRGPCAPCP 449
                 777777779***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578507.06E-574152No hitNo description
PROSITE patternPS01359080146IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.13E-5180228No hitNo description
PfamPF014220.07192209IPR000967Zinc finger, NF-X1-type
SMARTSM004380.072192210IPR000967Zinc finger, NF-X1-type
CDDcd060085.32E-8234282No hitNo description
PfamPF014223.1E-6244262IPR000967Zinc finger, NF-X1-type
SMARTSM004381.5E-4244263IPR000967Zinc finger, NF-X1-type
CDDcd060086.69E-9287334No hitNo description
PfamPF014220.086297315IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0028297316IPR000967Zinc finger, NF-X1-type
CDDcd060083.47E-9341390No hitNo description
PfamPF014220.003351370IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16351371IPR000967Zinc finger, NF-X1-type
CDDcd060082.20E-8394442No hitNo description
PfamPF014228.4E-4404422IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0092404423IPR000967Zinc finger, NF-X1-type
CDDcd060083.56E-11421469No hitNo description
PfamPF014220.0032425449IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0079431450IPR000967Zinc finger, NF-X1-type
SMARTSM00438210488509IPR000967Zinc finger, NF-X1-type
PfamPF01422110498508IPR000967Zinc finger, NF-X1-type
PfamPF0142233517526IPR000967Zinc finger, NF-X1-type
SMARTSM0043894517562IPR000967Zinc finger, NF-X1-type
PfamPF014221.2599609IPR000967Zinc finger, NF-X1-type
SMARTSM004389.6599626IPR000967Zinc finger, NF-X1-type
SMARTSM004380.51636654IPR000967Zinc finger, NF-X1-type
SMARTSM0043829699721IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0016874Molecular Functionligase activity
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MTSPWNKIHI HHSHPSPPPP PLLSDSDSDG GDSSSSAPLR HSDLSDSIFK PYLELSGHSG  60
TDLSKIQSFL TSSSAGALSC LICLERIKPS DPTWSCSSLC FAVFHLFCIQ SWARQASDLA  120
AARAVTRLSI SSASASDTAL WNCPKCRSEY NKSHIPKTYF CFCGKIENPP NDPWILPHSC  180
GEVCGRPLKH NCGHHCLLLC HPGPCPSCPK LVKVRCFCGC LEDVRRCGFK EFSCNKPCSK  240
FLDCGVHRCI ELCHPGACPP CRTRGVHACQ CAKVKEEREC CDRVFQCGNP CEKRLGCGKH  300
VCERGCHSGK CGECPLKGKR TCPCGKRVYE GMPCDAPVQL CGATCDKMLP CGYHRCPERC  360
HRGQCVETCR VVVKKSCRCG SLKKDVPCYQ DLACERKCQR MRDCGRHACK RRCCDGDCPP  420
CSEICGRKLR CKNHKCPSPC HRGPCAPCPI MVTISCACGE TRFEVPCGTE MDQKPPRCPK  480
PCPITPLCRH ASNIKPHKCH YGACHPCRLP CAEEYQCGHT CKLRCHGARP PPNPEFSLKP  540
KKKKVIQQSE GVPGTPCPPC PELVWRSCAG QHIGAERMMV CSDKSQFSCE NLCGNPLPCA  600
NHYCTKTCHA LENQLQGSEP CEDCYLPCQK EREPACPHHC PRRCHPEDCP PCKVLIKRSC  660
HCGAMVHVFE CLYYNSLSAK GQETVRSCGG PCHRKLPNCT HLCPETCHPG QCPNAEKCCK  720
KVTVRCKCKT LKKEWVCQDV QAAYHLAGCH PMDIPKIQFG VGLIPCNSDC QSKVQVVESE  780
LQLRKTRVTE VQEPDAEKSV RKRRKRREQV LESKEASKLQ KIISRMKRFL LFVFILVILL  840
AATYYGYKGL LWLNDWMNEV DERRQIYSRI K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1800806RKRRKRR
2800807RKRRKRRE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36372.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028214354.10.0NF-X1-type zinc finger protein NFXL2-like isoform X1
RefseqXP_028214355.10.0NF-X1-type zinc finger protein NFXL2-like isoform X1
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0B2RX380.0A0A0B2RX38_GLYSO; NF-X1-type zinc finger protein NFXL2
STRINGGLYMA18G03080.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]