PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36416.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family DBB
Protein Properties Length: 292aa    MW: 31989.7 Da    PI: 5.3474
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36416.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.31.2e-06447542
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                 C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  KHN36416.1  4 QCNVCEAAEAKVLCCADEAALCWECDEKVHAAnklaskHQRVPL 47
                7******99*********************66899999999986 PP
2zf-B_box26.11.8e-085495338
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                ++kC+ ++e    +fC +++ llC++C +++H        H+
  KHN36416.1 54 MPKCDICQEMVGYFFCLEDRALLCRNCDVSIHTAnacvsdHQ 95
                799*******9*********************5456666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.765147IPR000315B-box-type zinc finger
CDDcd000212.31E-8347No hitNo description
PfamPF006433.5E-5447IPR000315B-box-type zinc finger
SMARTSM003368.3E-11447IPR000315B-box-type zinc finger
PROSITE profilePS501199.1435299IPR000315B-box-type zinc finger
SMARTSM003361.0E-145299IPR000315B-box-type zinc finger
PfamPF006434.0E-65495IPR000315B-box-type zinc finger
CDDcd000211.53E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MKIQCNVCEA AEAKVLCCAD EAALCWECDE KVHAANKLAS KHQRVPLSLS ASHMPKCDIC  60
QEMVGYFFCL EDRALLCRNC DVSIHTANAC VSDHQRFLLT GVRVGLEATE RGASSSSVKS  120
QSGEKMSDAK SSSISRNVSS LPQPSNANEV LPLQMQGVEE FPPSNFSGYT SGNVSQWPIE  180
EFLGLNELSQ YYNYMDGSSK ADSGKLGDSD SSVLRSGEED MDDDGFLGRV PDSSWTVPQI  240
PSPPTASGLY WPKVPQYTSD SAMSVPDICF SHVRQPHHAQ HNSNVSKRRR QL
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36416.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-117AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533890.10.0B-box zinc finger protein 22
RefseqXP_028181681.10.0B-box zinc finger protein 22-like
SwissprotQ9SYM22e-87BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A0B2RPJ20.0A0A0B2RPJ2_GLYSO; B-box zinc finger protein 22
TrEMBLA0A0R4J4280.0A0A0R4J428_SOYBN; Uncharacterized protein
STRINGGLYMA09G14880.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-87light-regulated zinc finger protein 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]