PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36479.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 177aa    MW: 19719.3 Da    PI: 9.9621
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36479.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA627.3e-20107141135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  KHN36479.1 107 CQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRL 141
                 *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.833101137IPR000679Zinc finger, GATA-type
SMARTSM004013.0E-16101151IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.7E-15103164No hitNo description
Gene3DG3DSA:3.30.50.106.4E-15105139IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.39E-14106154No hitNo description
PfamPF003202.3E-17107141IPR000679Zinc finger, GATA-type
PROSITE patternPS003440107132IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEAIGSVDDL LDFSLDIGEK DDDDDKPRKA CPSLNSKCGD PSLFNPLVQV DPNHSFSVPV  60
RARSKSRSRR RPGLAENSTQ QVWWRQPSNE TSKADEGMKI SPIGRKCQHC GAEKTPQWRA  120
GPLGPKTLCN ACGVRFKSGR LVPEYRPASS PSFRSDLHSN SHRKIVEMRK QKQMGMG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36479.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0972871e-159BT097287.1 Soybean clone JCVI-FLGm-16E7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025979746.16e-90GATA transcription factor 1-like isoform X2
TrEMBLA0A0B2RW601e-128A0A0B2RW60_GLYSO; GATA transcription factor 1
STRINGGLYMA10G25480.12e-76(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-43GATA transcription factor 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]