PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36536.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 726aa    MW: 78827.2 Da    PI: 5.7361
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36536.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2054109156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  KHN36536.1  54 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 109
                 688999***********************************************999 PP
2START224.82.7e-702484671206
                 HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
       START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                 ela +a++el+ +a+ +ep+W +     + +n+de++++f+++ +     ++ ea+r+++vv+m++++lve+l+d++ qW++ +a    +a+tlev+s+
  KHN36536.1 248 ELAVAAMEELIGMAQMGEPLWLTTLdgtTVLNEDEYIRSFPRGIGpkpagFKFEASRETAVVIMNHVNLVEILMDVN-QWSTVFAgivsRAMTLEVLST 345
                 57899********************99999************999********************************.********************* PP

                 T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
       START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                 g      galq+m+ae q++splvp R+++fvRy++q+g+g+w++vdvS+d+ ++ p    ++R++++pSg+li++++ng+skv+wvehv++++r +h+
  KHN36536.1 346 GvagnynGALQVMTAEVQVPSPLVPtRESYFVRYCKQHGDGTWAVVDVSLDNLRPSP----SARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHN 440
                 *******************************************************99....5************************************* PP

                 HHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 180 llrslvksglaegaktwvatlqrqcek 206
                 l+++lv+sg+a+gak+wvatl+rqce+
  KHN36536.1 441 LYKQLVSSGHAFGAKRWVATLDRQCER 467
                 *************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-2333109IPR009057Homeodomain-like
SuperFamilySSF466891.71E-1944111IPR009057Homeodomain-like
PROSITE profilePS5007116.92551111IPR001356Homeobox domain
SMARTSM003891.2E-1952115IPR001356Homeobox domain
CDDcd000862.46E-1954112No hitNo description
PfamPF000464.1E-1854109IPR001356Homeobox domain
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PROSITE profilePS5084844.182239470IPR002913START domain
SuperFamilySSF559615.13E-35239469No hitNo description
CDDcd088751.61E-129243466No hitNo description
SMARTSM002341.4E-63248467IPR002913START domain
PfamPF018522.0E-59249467IPR002913START domain
Gene3DG3DSA:3.30.530.201.8E-5342461IPR023393START-like domain
SuperFamilySSF559618.24E-25487718No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MEAGQLHPLD MPQNTSESDV PRIREDDFDS ATKSGSENLE GASGEDQDPR PNKKKRYHRH  60
TQHQIQEMEA FFKECPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKT QHERHENTQL  120
RTENEKLRAD NMRFREALGN ASCPNCGGPT AIGEMSFDEH HLRLENARLR EEIDRISAIA  180
AKYVGKPVVS YPLVSPSSIP PRPLELGIGG GFGGQPGGTG GDMYGGAAGD LLRSISGPTE  240
ADKPIIIELA VAAMEELIGM AQMGEPLWLT TLDGTTVLNE DEYIRSFPRG IGPKPAGFKF  300
EASRETAVVI MNHVNLVEIL MDVNQWSTVF AGIVSRAMTL EVLSTGVAGN YNGALQVMTA  360
EVQVPSPLVP TRESYFVRYC KQHGDGTWAV VDVSLDNLRP SPSARCRRRP SGCLIQEMPN  420
GYSKVIWVEH VEVDDRGVHN LYKQLVSSGH AFGAKRWVAT LDRQCERLAS AMATNIPTVD  480
VGVITNQDGR KSMLKLAERM VISFCAGVSA STAHTWTTLS GTGADDVRVM TRKSVDDPGR  540
PPGIVLSAAT SFWLPVSPKR VFEFLRDENS RSEWDILSNG GVVQEMAHIA NGRDTGNCVS  600
LLRVNSANSS QSNMLILQES CADSTGSFVI YAPVDIVAMN VVLNGGDPDY VALLPSGFAI  660
LPDGTTAHGG GIGDTGHGGS LLTVAFQILV DSVPTAKLSL GSVATVNNLI ACTVERIKAA  720
LSGEVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36536.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311700.0KT031170.1 Glycine max clone HN_CCL_122 homeodomain/HOMEOBOX transcription factor (Glyma13g38430.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543387.10.0homeobox-leucine zipper protein HDG2
RefseqXP_006594895.10.0homeobox-leucine zipper protein HDG2
RefseqXP_028191621.10.0homeobox-leucine zipper protein HDG2-like
RefseqXP_028191623.10.0homeobox-leucine zipper protein HDG2-like
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0K2CTA40.0A0A0K2CTA4_SOYBN; Homeodomain/HOMEOBOX transcription factor (Fragment)
TrEMBLA0A445ICA90.0A0A445ICA9_GLYSO; Homeobox-leucine zipper protein HDG2 isoform A
TrEMBLI1M4360.0I1M436_SOYBN; Uncharacterized protein
STRINGGLYMA13G38430.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2