PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36546.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 37aa    MW: 4291.85 Da    PI: 9.1197
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36546.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-073291745
                     HHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwq 45
                     k+ G + W+ Ia +++ gRt++++  +w 
       KHN36546.1  3 KLVGER-WSIIAGRIP-GRTAEEIEKYWT 29
                     566878.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.372136IPR017930Myb domain
SuperFamilySSF466895.07E-6232IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-9230IPR009057Homeodomain-like
CDDcd001670.00136828No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 37 aa     Download sequence    Send to blast
MYKLVGERWS IIAGRIPGRT AEEIEKYWTS RFSGSSE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36546.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2381141e-37KP238114.1 Lablab purpureus caprice and triptychon-like enhancer transcript variant X1 (etcl1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006593492.12e-19MYB transcription factor MYB172 isoform X1
RefseqXP_028189654.12e-19MYB-like transcription factor ETC1
TrEMBLA0A0R0GWD94e-18A0A0R0GWD9_SOYBN; Uncharacterized protein
TrEMBLA0A445IC974e-18A0A445IC97_GLYSO; MYB-like transcription factor ETC1
STRINGGLYMA12G32130.32e-18(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01380.14e-15MYB_related family protein