PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36564.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 239aa    MW: 26709.4 Da    PI: 8.2225
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36564.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH162.3e-0581135554
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C.......TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPk.as....kapskKlsKaeiLekAveYIksL 54 
                 +  rE+ RRd++N++ + +  ++   +s      +++K +K++iL  A + + +L
  KHN36564.1  81 KACREKLRRDKLNERHAIILHIVFLeLSsilePSRQPKSDKVAILSDAARVVIQL 135
                 678************88888888886667887779*************9887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.09E-869151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.16676135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-480138No hitNo description
Gene3DG3DSA:4.10.280.102.1E-884148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1701.1E-4149181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDVNSSGGAS DWLYDYGFDI PVAGSDFMAS DSGGFRWGPQ SHNFKGPSNM SLEMEYSLDS  60
AVMENGPSKR LRTESCASGS KACREKLRRD KLNERHAIIL HIVFLELSSI LEPSRQPKSD  120
KVAILSDAAR VVIQLRNEAK RLKEMNDELQ AKVKELKGEK NELRDEKNRL KEEKEKLEQQ  180
VKVANIQPSF LPQAPDAKGQ VGSHKLIPFI GYPGIAMWQF MSPAAVDTSK DHLLRPPVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36564.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0971260.0BT097126.1 Soybean clone JCVI-FLGm-15N2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028187723.11e-168transcription factor bHLH115-like
SwissprotQ9C6826e-67BH115_ARATH; Transcription factor bHLH115
TrEMBLA0A445IC941e-166A0A445IC94_GLYSO; Transcription factor bHLH115 isoform A
STRINGGLYMA13G38140.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149161214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.13e-61bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]