PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36569.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 467aa    MW: 52211.8 Da    PI: 6.387
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36569.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS288.61.7e-88554492373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshlta 98 
                 ++lLl+cA a++s+d +laq++++ l++ asp gd++qRl++ f++AL +r +r +++ ++   +++     + + +++++l  ++++ P+++f++ + 
  KHN36569.1  55 EKLLLHCASALESNDITLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPTAMSFKGSNTI----QRRLMSVTELagYVDLIPWHRFGYCAS 149
                 689***************************************************77766643322222....333334444466*************** PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl............. 181
                 N+ I++a+ g +rvHi+Df+i++++QWp++++ La+RpegppslRiT+ +   ++    + +++e+g rL +fA+  +vpfefnv+             
  KHN36569.1 150 NNEIYKAITGFQRVHIVDFSITHCMQWPTFIDGLAKRPEGPPSLRITVPSCRPHVpplVNISIHEVGLRLGNFAKFRDVPFEFNVIgntegpltpaels 248
                 ***********************************************9888555588999**************************************9 PP

        GRAS 182 .......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                         +  l+ l++ +L+++++Eal++n++  l +l d++  ++      rd++L+l+k+l+P++v +v++++d++++s+  r++ ++++ +  fd
  KHN36569.1 249 destsfhFEAMLSLLNPTMLNLREDEALVINCQNWLRYLSDDRKGISCqsfsLRDAFLNLIKGLNPRIVLLVDEDCDLSASSLTSRITTCFNHLWIPFD 347
                 999998556689999*************************9987665444669********************************************** PP

        GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                 +le+ lp++s +r+  E   +g++i+n++  eg +r+er e+  + ++r++++G+ +vp+ ++++ ++k ll +++  g+ ++ e+g lvl+Wk+++ v
  KHN36569.1 348 ALETFLPKDSCQRSEFESD-IGQKIENIIGYEGHQRIERLESGVQMSQRMKNVGYLSVPFCDETVREVKGLLDEHA-SGWGMKREEGMLVLTWKGNSCV 444
                 *******************.********************************************************.8899****************** PP

        GRAS 369 svSaW 373
                 +++aW
  KHN36569.1 445 FATAW 449
                 ***** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.33428431IPR005202Transcription factor GRAS
PfamPF035146.0E-8655449IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MQVTSSQSHM KAELKGTTSI SFQNPNTALF NTPHNNPLSG ALKGCLGSLD GACIEKLLLH  60
CASALESNDI TLAQQVMWVL NNVASPVGDT NQRLTSWFLR ALISRASRIC PTAMSFKGSN  120
TIQRRLMSVT ELAGYVDLIP WHRFGYCASN NEIYKAITGF QRVHIVDFSI THCMQWPTFI  180
DGLAKRPEGP PSLRITVPSC RPHVPPLVNI SIHEVGLRLG NFAKFRDVPF EFNVIGNTEG  240
PLTPAELSDE STSFHFEAML SLLNPTMLNL REDEALVINC QNWLRYLSDD RKGISCQSFS  300
LRDAFLNLIK GLNPRIVLLV DEDCDLSASS LTSRITTCFN HLWIPFDALE TFLPKDSCQR  360
SEFESDIGQK IENIIGYEGH QRIERLESGV QMSQRMKNVG YLSVPFCDET VREVKGLLDE  420
HASGWGMKRE EGMLVLTWKG NSCVFATAWV PCEILRDHHI GMDASLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-553445163474Protein SHORT-ROOT
5b3h_B5e-56344519420Protein SHORT-ROOT
5b3h_E5e-56344519420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36569.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543373.20.0scarecrow-like protein 32
RefseqXP_028188401.10.0scarecrow-like protein 32
TrEMBLA0A445IC850.0A0A445IC85_GLYSO; Scarecrow-like protein 32
TrEMBLK7M2U40.0K7M2U4_SOYBN; Uncharacterized protein
STRINGGLYMA13G38080.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-121GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]