PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36651.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 154aa    MW: 16936.8 Da    PI: 9.9497
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36651.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP422.5e-13771054977
                 EEETTT--SS--S-STTTT-------S-- CS
         SBP  49 fhelsefDeekrsCrrrLakhnerrrkkq 77 
                 fhel efD++krsCrr La++nerrrk++
  KHN36651.1  77 FHELAEFDDTKRSCRRSLAGYNERRRKNS 105
                 ***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS511419.54519104IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.75E-976107IPR004333Transcription factor, SBP-box
PfamPF031103.1E-877103IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.100.0017791IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEGLGSKMVV RSDRLKRDVA DCGDNNQNGY VEQEKKIKGV VSCAGKKGGG GNNNSIYAVL  60
STPIFMRPSS TTGGTGFHEL AEFDDTKRSC RRSLAGYNER RRKNSDQSQA EGSSRNKGTG  120
HPQLKDITCG QADERGRIQI TIHENAAYKH FQIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36651.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028186632.15e-73squamosa promoter-binding-like protein 3
TrEMBLA0A445IBQ91e-110A0A445IBQ9_GLYSO; Squamosa promoter-binding-like protein 4
STRINGGLYMA13G37130.11e-70(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.24e-14squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]