PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN36669.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 419aa MW: 46356.8 Da PI: 9.2123

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN36669.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.7e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F r nL+ H r H KHN36669.1 6 FVCEICLKGFQRDQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	13.7	0.00019	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ KHN36669.1 82 WKCEKCSKRYAVQSDWKAHSKTC 104 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.56E-5	5	28	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-4	5	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.305	6	28	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.3E-4	70	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.56E-5	77	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MATNRFVCEI CLKGFQRDQN LQLHRRGHNL PWKLKQRTSK EVRKRVYVCP EKTCVHHHPS 60 RALGDLTGIK KHFCRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYK CDCGTIFSRR 120 DSFITHRAFC DALAEETARV NAASNISNYS IMQNPLGPNM TTQFSSFFKP NSCSDQEPAP 180 GNQTSNKGLS LWMTQTSQAH EAMANNNNLH EFHQLGSVTS PTAIYGTSGN PLASCSNPPP 240 SNYQLNWVFG NKLSSNGSHQ ELTSTASLPL VNNIVKDNQN LQLISVPSLY SSQHQSHQAS 300 SANMSATALL QKAAQVGTTS SDPSSLFHGS IGLKCNSPGQ DGNKFCGMYG SSSVLTTSHH 360 GSEAENNNNN YSGDLSQIPP TKRRHVQNEE SAWGQTRDFL GVGGANHLPP FINQRMDLI

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MATNRFVCEI CLKGFQRDQN LQLHRRGHNL PWKLKQRTSK EVRKRVYVCP EKTCVHHHPS  60
RALGDLTGIK KHFCRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTREYK CDCGTIFSRR  120
DSFITHRAFC DALAEETARV NAASNISNYS IMQNPLGPNM TTQFSSFFKP NSCSDQEPAP  180
GNQTSNKGLS LWMTQTSQAH EAMANNNNLH EFHQLGSVTS PTAIYGTSGN PLASCSNPPP  240
SNYQLNWVFG NKLSSNGSHQ ELTSTASLPL VNNIVKDNQN LQLISVPSLY SSQHQSHQAS  300
SANMSATALL QKAAQVGTTS SDPSSLFHGS IGLKCNSPGQ DGNKFCGMYG SSSVLTTSHH  360
GSEAENNNNN YSGDLSQIPP TKRRHVQNEE SAWGQTRDFL GVGGANHLPP FINQRMDLI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-37	78	145	3	70	Zinc finger protein JACKDAW
5b3h_F	6e-37	78	145	3	70	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269\|PubMed:21265895, ECO:0000269\|PubMed:25829440, ECO:0000269\|PubMed:25929516}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN36669.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269\|PubMed:16640459}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003539541.2	0.0	zinc finger protein MAGPIE
Refseq	XP_028193041.1	0.0	zinc finger protein MAGPIE-like
Swissprot	Q9FFH3	1e-117	IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBL	A0A445IBV9	0.0	A0A445IBV9_GLYSO; Zinc finger protein NUTCRACKER
TrEMBL	I1M3P4	0.0	I1M3P4_SOYBN; Uncharacterized protein
STRING	GLYMA13G36960.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4626	29	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-117	C2H2-like zinc finger protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Long Y, et al. In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots. Nature, 2017. 548(7665): p. 97-102 [PMID:28746306]