PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36709.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 97aa    MW: 10723 Da    PI: 10.0373
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36709.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.91.3e-107797222
                --SS-EEEEEEE--TT-SS-E CS
        WRKY  2 dDgynWrKYGqKevkgsefpr 22
                +D ++WrKYGqK++kgs++pr
  KHN36709.1 77 SDSWAWRKYGQKPIKGSPYPR 97
                69******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-96897IPR003657WRKY domain
SuperFamilySSF1182904.84E-87297IPR003657WRKY domain
PROSITE profilePS5081112.9557797IPR003657WRKY domain
PfamPF031063.4E-67897IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MHHRRFSKLI HVADPDEPES GPEPASEAGP ASPSSGEDTK TEAPSPKKRR EMKKRVVTIP  60
IGDVDGSKSK GENYPPSDSW AWRKYGQKPI KGSPYPR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36709.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195871e-147EU019587.1 Glycine max WRKY52 (WRKY52) mRNA, complete cds.
GenBankEU3753511e-147EU375351.1 Glycine max transcription factor (WRKY16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028186817.12e-63probable WRKY transcription factor 69
SwissprotQ93WV53e-31WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBLA0A445IBE94e-62A0A445IBE9_GLYSO; Putative WRKY transcription factor 69 isoform A
TrEMBLA7LHI84e-62A7LHI8_SOYBN; Transcription factor
STRINGGLYMA12G33990.18e-63(Glycine max)
STRINGGLYMA13G36540.17e-63(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.24e-29WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]