PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36843.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 180aa    MW: 20304.6 Da    PI: 8.7055
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36843.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP97.31.3e-3066135278
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 Cq+e C adl+ ak+yhrrhkvCe hskap+v+v+gl+qr       fhel efDe+krsCrrrLa+hnerrrk++a
  KHN36843.1  66 CQAEICGADLTVAKRYHRRHKVCELHSKAPSVMVAGLRQR-------FHELAEFDEAKRSCRRRLARHNERRRKSNA 135
                 **************************************97.......7**************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.1E-2558120IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.48763133IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.5E-2964137IPR004333Transcription factor, SBP-box
PfamPF031101.6E-2166132IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEIKSGERRQ VSIEKVRRDN TVEVEDEEEE DESVVGGEGG LAEDERKKIG GGSGRRGSSG  60
VSPPSCQAEI CGADLTVAKR YHRRHKVCEL HSKAPSVMVA GLRQRFHELA EFDEAKRSCR  120
RRLARHNERR RKSNAETCNE GCSGSKGQHP AETHCRNTDD WGRIQMNIAK NSGYKFFHIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-2654132184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36843.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0989281e-175BT098928.1 Soybean clone JCVI-FLGm-16D18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543233.11e-105squamosa promoter-binding protein 1
RefseqXP_028190356.11e-105squamosa promoter-binding protein 1-like
SwissprotQ387415e-31SBP1_ANTMA; Squamosa promoter-binding protein 1
SwissprotQ9S7P57e-28SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A445IB341e-104A0A445IB34_GLYSO; Squamosa promoter-binding protein 1
TrEMBLI1M3601e-104I1M360_SOYBN; Uncharacterized protein
STRINGGLYMA13G35000.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.21e-20squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]
  5. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]