PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN37000.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 369aa    MW: 41341.9 Da    PI: 7.0318
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN37000.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.3e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
       KHN37000.1 14 KGPWSPEEDAKLKSYIEKHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding38.13.6e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
       KHN37000.1  69 GGFSEEEDNIICSLYVSIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.813962IPR017930Myb domain
SuperFamilySSF466896.13E-2711109IPR009057Homeodomain-like
SMARTSM007173.8E-131364IPR001005SANT/Myb domain
PfamPF002494.4E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-251569IPR009057Homeodomain-like
CDDcd001678.61E-101662No hitNo description
PROSITE profilePS5129420.91263117IPR017930Myb domain
SMARTSM007174.7E-1167115IPR001005SANT/Myb domain
PfamPF002496.4E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2370117IPR009057Homeodomain-like
CDDcd001677.27E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGRAPCWDKA NVKKGPWSPE EDAKLKSYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNLKHGG FSEEEDNIIC SLYVSIGSRW SVIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
HRREPRNRGN YNSVKQEIDV NRGSSNDGDS SSLSLLQENG NTTQQQQQPC WPQNINNMPV  180
LPLQVPLPYT NQGPCFNDQD SIKKLLIKLG GRFSGDYYHP TLDGLNLEFS SDGQQIYQEQ  240
VHVGSSSAAA ACISSTINNN NEVQFAQTDQ YSGVHNLVQG QGGNFTPSFE EMVSSSNYPD  300
GLEFLYNEDM IDHRIIESPT TTVTATITTN WGETSTPLYH HHNSIASNYQ SQGVTQECAL  360
QYFSYPGAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN37000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556962.10.0transcription factor RAX3
RefseqXP_028209798.10.0transcription factor RAX3-like
SwissprotQ9M2Y98e-84RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A445GAT50.0A0A445GAT5_GLYSO; Transcription factor RAX3
TrEMBLK7K0T60.0K7K0T6_SOYBN; Uncharacterized protein
STRINGGLYMA0041S00310.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-76myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  4. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]