PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN37005.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 248aa    MW: 27621.7 Da    PI: 6.3947
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN37005.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.9e-0928502346
                     -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                     +W++Ia++++ gRt++++k++w++
       KHN37005.1 28 SWSAIASKLP-GRTDNDVKNYWNT 50
                     6*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.407156IPR017930Myb domain
SuperFamilySSF466894.29E-82460IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-132762IPR009057Homeodomain-like
PfamPF002495.7E-72750IPR001005SANT/Myb domain
CDDcd001671.88E-62952No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEALLKKRTT SFAPSMLRWE AGMFFQTSWS AIASKLPGRT DNDVKNYWNT KLKKKIMARK  60
VTLKTLTHND TLPSTSTPSS LTNNQNVKTS QNSPFPSQNQ NSPPSVLPVL DANNALFITN  120
NEKSIISFDQ THHGLYSPQV MDDVVSQIGA SSRIINNNNN NNPMLSLSQE GSSSISDSSS  180
IAMNNNNVSH PEQQHASDES MEMLMDFGFG FPFDFANGPN CHYERVGEFA TSSYPEWVDF  240
SYADIKPH
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN37005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-54AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550294.11e-160transcription factor RAX2
RefseqXP_028210151.11e-160transcription factor RAX2-like
TrEMBLA0A445GAQ11e-159A0A445GAQ1_GLYSO; Transcription factor RAX3
TrEMBLK7MNI71e-159K7MNI7_SOYBN; Uncharacterized protein
STRINGGLYMA17G35020.21e-159(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-12myb domain protein 36
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]