PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN37412.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 571aa MW: 61747.7 Da PI: 9.5737

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN37412.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H KHN37412.1 72 FICEVCNKGFQREQNLQLHRRGH 94 89*******************88 PP
2	zf-C2H2	11.9	0.00069	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ KHN37412.1 148 WKCDKCSKKYAVQSDWKAHSKTC 170 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.71E-7	71	94	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.3E-6	71	94	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	2.8E-5	72	94	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.99	72	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	72	94	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	113	143	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.4E-5	136	169	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.71E-7	143	168	No hit	No description
SMART	SM00355	150	148	168	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence Send to blast
MAASSSSASL FGFREEDQQN QMKQQHSLTP SSSTTPAAPP PQKKKRNQPG TPYPDAEVIA 60 LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKTTKEPKR KVYLCPEPTC 120 VHHDPSRALG DLTGIKKHYS RKHGEKKWKC DKCSKKYAVQ SDWKAHSKTC GTREYRCDCG 180 TLFSRRDSFI THRAFCDALA QESARQPPSL GGGIGSHLYG STTNMALNLS QVGSQIQDPS 240 NAQPTELLRL GATSGRTGHF DHILGSPFRP SNQQQQPFFM SEQPNQTYHH PDQNKPFQQG 300 LMQQLSDHHH LNNNNSPFNL PFLSSNTANA SFSEHFNNAN GGGNNNNNNE GTNYFATSSA 360 PSLFSNSANA NANALSHMSA TALLQKAAQM GATSSNGTAS LLKSFGSASS SSGGGSKSEQ 420 QHRVPPLVNA ANYVGGMFGG NHVNEQQSNS NLQDLMNSFA VGGNSSIFEA GGFEAYDHSN 480 NNNNRDPKVL AMSGSNSVGG SDRLTRDFLG VGQIVRGMSG SGGVAQREQQ QQHGFNLSSL 540 EAERNNNNNN NSNNAAPSSG QAFGGGGGNF Q

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence Send to blast

MAASSSSASL FGFREEDQQN QMKQQHSLTP SSSTTPAAPP PQKKKRNQPG TPYPDAEVIA  60
LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKTTKEPKR KVYLCPEPTC  120
VHHDPSRALG DLTGIKKHYS RKHGEKKWKC DKCSKKYAVQ SDWKAHSKTC GTREYRCDCG  180
TLFSRRDSFI THRAFCDALA QESARQPPSL GGGIGSHLYG STTNMALNLS QVGSQIQDPS  240
NAQPTELLRL GATSGRTGHF DHILGSPFRP SNQQQQPFFM SEQPNQTYHH PDQNKPFQQG  300
LMQQLSDHHH LNNNNSPFNL PFLSSNTANA SFSEHFNNAN GGGNNNNNNE GTNYFATSSA  360
PSLFSNSANA NANALSHMSA TALLQKAAQM GATSSNGTAS LLKSFGSASS SSGGGSKSEQ  420
QHRVPPLVNA ANYVGGMFGG NHVNEQQSNS NLQDLMNSFA VGGNSSIFEA GGFEAYDHSN  480
NNNNRDPKVL AMSGSNSVGG SDRLTRDFLG VGQIVRGMSG SGGVAQREQQ QQHGFNLSSL  540
EAERNNNNNN NSNNAAPSSG QAFGGGGGNF Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-33	144	205	3	64	Zinc finger protein JACKDAW
5b3h_F	1e-33	144	205	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN37412.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC160454	0.0	AC160454.31 Glycine max cultivar Williams 82 clone gmw1-15k6, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028183913.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q9ZUL3	1e-135	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A445ITS2	0.0	A0A445ITS2_GLYSO; Protein indeterminate-domain 5, chloroplastic isoform A
STRING	GLYMA10G42660.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1536	33	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-104	indeterminate(ID)-domain 5

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]