PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN37579.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 277aa    MW: 31281.6 Da    PI: 5.8019
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN37579.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC140.93.1e-4481181198
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql++fw+kq   i++atd++ h+lPlarikki+k+dedvk +saeaPv+++kace+fi+eltlr+w + ee +r+ +kk dia++++r+d+fdfl+d+v
  KHN37579.1  81 QLNNFWAKQcqeIQEATDLRTHSLPLARIKKIMKSDEDVKLVSAEAPVVFAKACEMFIMELTLRAWANVEEDQRKIIKKHDIASSISRADVFDFLIDTV 179
                 799*****98889999*********************************************************************************** PP

       NF-YC  97 pr 98 
                 pr
  KHN37579.1 180 PR 181
                 98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.52E-2673175IPR009072Histone-fold
PfamPF008081.4E-20103165IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.8E-32104181IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MVKEYFAVYN NNAKMDQNQH VQPAQEAYGE NQYQSNPVTT PTVLPTQTSD SSLSSSYPRQ  60
HPNDPQLEAM YELRQERLQQ QLNNFWAKQC QEIQEATDLR THSLPLARIK KIMKSDEDVK  120
LVSAEAPVVF AKACEMFIME LTLRAWANVE EDQRKIIKKH DIASSISRAD VFDFLIDTVP  180
RPLENILDQQ GFVGLPTSTV PTPLNDACYH NPPPQALVPG NPYGSPRIAV GMPILDQNHP  240
GLQIHHFLTP MEPTPPPPPP IPKTLLLVRI VEQIISH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-4289181395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN37579.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014621201.10.0nuclear transcription factor Y subunit C-2 isoform X1
RefseqXP_028187073.10.0nuclear transcription factor Y subunit C-2-like isoform X1
TrEMBLA0A445I7L70.0A0A445I7L7_GLYSO; Nuclear transcription factor Y subunit C-9 isoform D (Fragment)
STRINGGLYMA13G27780.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2239424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-49nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]