PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN37619.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C3H

Protein Properties

Length: 699aa MW: 75461.8 Da PI: 6.8127

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN37619.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	279	299	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg KHN37619.1 279 PCPDFRK-GACRRGDMCEYAHG 299 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	2.8E-18	6	144	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.9E-19	9	156	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.98E-16	9	153	No hit	No description
SMART	SM00248	200	10	40	IPR002110	Ankyrin repeat
Pfam	PF12796	4.1E-10	19	125	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.63	57	87	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	19.624	57	158	IPR020683	Ankyrin repeat-containing domain
PRINTS	PR01415	4.4E-5	58	73	IPR002110	Ankyrin repeat
SMART	SM00248	9.0E-4	92	124	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.155	92	127	IPR002110	Ankyrin repeat
PRINTS	PR01415	4.4E-5	111	125	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	274	300	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	279	301	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.1E-5	279	299	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.0E-4	279	301	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-4	307	337	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	35	309	332	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence Send to blast
MKSLTVNTED SFSSLLELAS NNDIEGFKVL LEKDSSTINE VGLWYGRQNG SKQFVLEHRT 60 PLMVAATYGS IDVMKMVLLC PEADVNFACG ANKTTALHCA ASGGSTKAVD AVKLLLSAGA 120 DVNCVDANGN RPIDVIAVPP KLQGAKAVLE ELLSDNASDV SVGEFSVPVS VNSSSPGSPA 180 HSSNGMPYTP SVSPPSPVAA KFTDAAICSL SEKKEYPIDP SLPDIKNSIY ATDEFRMFSF 240 KVRPCSRAYS HDWTECPFVH PGENARRRDP RKFHYSCVPC PDFRKGACRR GDMCEYAHGV 300 FECWLHPAQY RTRLCKDGTS CNRRVCFFAH TAEELRPLYV STGSAAPSPR SSASGPNVMD 360 MAAAMSLFPG SPSSGSSDSH FGQPMSPSAN GMPLSSAWAQ PNVPALHLPG SNLQSSRLRS 420 SLSARDIPPE DLNMMSDLDG QQQHHLNDLS CYIQPRPGAS SVSRSGRSKT LTPSNLEELF 480 SAEISLSPRY SDPAAGSVFS PTHKSAVLNQ FQQLQSMLSP INTNLLSPKN VEHPLFQASF 540 GVSPSGRMSP RSVEPISPMS ARLSAFAQRE KQQQQLRSVS SRDLGANSPA SLVGSPANPW 600 SKWGSPIGKA DWSVNGDSLG RQMRRSSSFE RKNNGEEPDL SWVQSLVKES PPEMIKEKFA 660 SPMPTASADG PNSNSQIESI DHSVLGAWLE QMQLDQLVV

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence Send to blast

MKSLTVNTED SFSSLLELAS NNDIEGFKVL LEKDSSTINE VGLWYGRQNG SKQFVLEHRT  60
PLMVAATYGS IDVMKMVLLC PEADVNFACG ANKTTALHCA ASGGSTKAVD AVKLLLSAGA  120
DVNCVDANGN RPIDVIAVPP KLQGAKAVLE ELLSDNASDV SVGEFSVPVS VNSSSPGSPA  180
HSSNGMPYTP SVSPPSPVAA KFTDAAICSL SEKKEYPIDP SLPDIKNSIY ATDEFRMFSF  240
KVRPCSRAYS HDWTECPFVH PGENARRRDP RKFHYSCVPC PDFRKGACRR GDMCEYAHGV  300
FECWLHPAQY RTRLCKDGTS CNRRVCFFAH TAEELRPLYV STGSAAPSPR SSASGPNVMD  360
MAAAMSLFPG SPSSGSSDSH FGQPMSPSAN GMPLSSAWAQ PNVPALHLPG SNLQSSRLRS  420
SLSARDIPPE DLNMMSDLDG QQQHHLNDLS CYIQPRPGAS SVSRSGRSKT LTPSNLEELF  480
SAEISLSPRY SDPAAGSVFS PTHKSAVLNQ FQQLQSMLSP INTNLLSPKN VEHPLFQASF  540
GVSPSGRMSP RSVEPISPMS ARLSAFAQRE KQQQQLRSVS SRDLGANSPA SLVGSPANPW  600
SKWGSPIGKA DWSVNGDSLG RQMRRSSSFE RKNNGEEPDL SWVQSLVKES PPEMIKEKFA  660
SPMPTASADG PNSNSQIESI DHSVLGAWLE QMQLDQLVV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN37619.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031156	0.0	KT031156.1 Glycine max clone HN_CCL_174 C3H-type 1 Zn transcription factor (Glyma13g27280.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014621190.1	0.0	zinc finger CCCH domain-containing protein 30
Refseq	XP_028190482.1	0.0	zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A445I7F0	0.0	A0A445I7F0_GLYSO; Zinc finger CCCH domain-containing protein 30 isoform A
TrEMBL	I1M0Y0	0.0	I1M0Y0_SOYBN; C3H-type 1 Zn transcription factor
STRING	GLYMA13G27280.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1732	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]