PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN37805.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 495aa    MW: 54163.9 Da    PI: 8.668
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN37805.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05628123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C+ C+k F r  nL+ H r H
  KHN37805.1  6 FICEVCNKGFQREQNLQLHRRGH 28
                89*******************88 PP
2zf-C2H212.80.0003782104123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +  +s+ k H +t+
  KHN37805.1  82 WKCEKCSKKYAVQSDWKAHSKTC 104
                 58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.75E-7528No hitNo description
Gene3DG3DSA:3.30.160.605.4E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121712.4E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.99628IPR007087Zinc finger, C2H2
SMARTSM003550.0052628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551104777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.4E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.75E-777102No hitNo description
SMARTSM0035514082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK EQKRKVYLCP EPTCVHHDPS  60
RALGDLTGIK KHYYRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  120
DSFITHRAFC DALAQESARF PGGLNPLGTH LFGTNHTTSL SLSQVGNQLS QVQKQNQTAT  180
NYNSILRLGN NNVGAAATKF EHLIPPLNHS SFGHSPQSMP SSAFFMNDNT NQALFEEHQS  240
QLQGLMQLQD LQGNTNNSDS SSVGPPNSNL FNLSFFPISS NIGTGTIIPG QFNNISGSNQ  300
GTTTTTTTTL YGNSIENESS PHAGSSFSSI FGNSIENASS SHMSATALLQ QAAQMGSTTT  360
TTTNNGSSLL GGMCTNNSSK AENDHHHNLQ GLMNSIANGN TSLFGSMQGN ENNLCGFHNV  420
DESNNNKLPQ NLSVNFGGSD KLTLDFLGVG GMMTNMSGGF SQREQQQHVT GTMSSLDHDL  480
KSAQSYRHFG KSTLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-3678140365Zinc finger protein JACKDAW
5b3h_F5e-3678140365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN37805.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-167AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535516.10.0protein indeterminate-domain 4, chloroplastic
RefseqXP_006589397.10.0protein indeterminate-domain 4, chloroplastic
RefseqXP_028184488.10.0protein indeterminate-domain 4, chloroplastic-like
RefseqXP_028184489.10.0protein indeterminate-domain 4, chloroplastic-like
TrEMBLA0A445IQ800.0A0A445IQ80_GLYSO; Protein indeterminate-domain 4, chloroplastic isoform A
TrEMBLK7LKK10.0K7LKK1_SOYBN; Uncharacterized protein
STRINGGLYMA10G35070.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.12e-91indeterminate(ID)-domain 5