PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN37885.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 351aa    MW: 39113.1 Da    PI: 7.0908
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN37885.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00083147169123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++F++   L  H  +H
  KHN37885.1 147 YECKTCNRTFPSFQALGGHRASH 169
                 99**********99999998887 PP
2zf-C2H2130.0003228250123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F++   L  H+r+H
  KHN37885.1 228 HECSICGAEFTSGQALGGHMRRH 250
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.3E-13146171IPR007087Zinc finger, C2H2
SuperFamilySSF576677.78E-9146169No hitNo description
SMARTSM003550.052147169IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637147174IPR007087Zinc finger, C2H2
PROSITE patternPS000280149169IPR007087Zinc finger, C2H2
SuperFamilySSF576677.78E-9223250No hitNo description
PfamPF139125.2E-13227252IPR007087Zinc finger, C2H2
SMARTSM003550.01228250IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723228250IPR007087Zinc finger, C2H2
PROSITE patternPS000280230250IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEAPEELSFG GSKDHTNIAK GKRTKRVRPQ SPIPFSITAN SSTGGEKEEG CYNVDDDNNN  60
NIIKNEDINN NNINNINSTP TTSAELQDIT DEEEDMANCL ILLAQGQSRE SPKHAEEDAG  120
MSYAKHNSRK FLEAATLGSS RAGYYVYECK TCNRTFPSFQ ALGGHRASHK KPKALMAIGQ  180
KKKQQHLLSS DEEEFQLKTN KSPFSIQLNT NGNLYSSSSN NNNKSKVHEC SICGAEFTSG  240
QALGGHMRRH RAPVGTTTPA TLSFTPLALE PEEDHPRKKR NVLNLDLDLN LPAPEDDHRE  300
SKFAFASKQQ QQQHGQKQPQ QHHHPEQKQQ QPQQQQTSLV FPVPALVDCH Y
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN37885.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589351.20.0zinc finger protein ZAT5
TrEMBLI1LCM00.0I1LCM0_SOYBN; Uncharacterized protein
STRINGGLYMA10G34100.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-58C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]