PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN37890.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 307aa    MW: 33605.2 Da    PI: 6.9965
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN37890.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.29e-343690155
     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl+h+kSHLQkYRl
  KHN37890.1 36 KPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRL 90
                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-323391IPR009057Homeodomain-like
PROSITE profilePS5129410.7263393IPR017930Myb domain
TIGRFAMsTIGR015578.9E-243691IPR006447Myb domain, plants
SuperFamilySSF466891.08E-163692IPR009057Homeodomain-like
PfamPF002497.8E-83889IPR001005SANT/Myb domain
PfamPF143794.5E-13134179IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MFSRLIHPHE GQEDMQGGSN HAHLGDPCLV LTSDPKPRLR WTADLHERFV DAVTQLGGAS  60
KATPKAIMRT MNVKGLTLYH LKSHLQKYRL GKQSGKDSDE GLKDGMSASY LQESPGTDNS  120
SPKLPASDAN EGHEVKEALR AQMEVQSKLH LLVEAEKHLQ IRQDAERRYM GMLERACKML  180
ADQFIGDVII DRDGQKFQGL ENKTSRSPLV DHGGFFPAAC TEVGGMHVSE VPPILQPQGA  240
ECSSESCLKS LESLGGLTLE GSPGGSKKRM LNLDSMVAPL IWSEANTRTQ GIHLAQVNPP  300
GMTRYGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-193692157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-193692157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-193692157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-193692157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN37890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0951070.0BT095107.1 Soybean clone JCVI-FLGm-19M17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240149.10.0MYB-CC domain-containing transcription factor PHR18 isoform 1
RefseqXP_028185945.10.0protein PHR1-LIKE 2-like isoform X1
TrEMBLA0A445IPV70.0A0A445IPV7_GLYSO; Protein PHR1-LIKE 2 isoform A
TrEMBLC6TC290.0C6TC29_SOYBN; Uncharacterized protein
TrEMBLK7LKE60.0K7LKE6_SOYBN; Uncharacterized protein
STRINGGLYMA10G34050.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66183349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.13e-64G2-like family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]