PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38167.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 371aa    MW: 40678.2 Da    PI: 7.8287
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38167.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.91.1e-10934227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                +++ C +++ t tCk+Gd+CkF H++
  KHN38167.1  9 GEKDCAHYMLTRTCKFGDSCKFDHPF 34
                7889********************95 PP
2zf-CCCH35.31.9e-115985127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++++ C++f++t  Ck+G++CkF+H++
  KHN38167.1 59 PGEPDCPYFLKTQRCKFGSKCKFNHPK 85
                5789*********************96 PP
3zf-CCCH39.31.1e-12103127327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C f+++tG C+yG+ CkF+H++
  KHN38167.1 103 EPPCAFYMKTGKCRYGAACKFHHPK 127
                 79*********************96 PP
4zf-CCCH39.78.4e-13180203326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 ++ C+f+++tG CkyG +C+++H+
  KHN38167.1 180 EVDCPFYMKTGSCKYGVTCRYNHP 203
                 689********************9 PP
5zf-CCCH39.97.2e-13266289326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 + +C+f+++tG+Ck+G+rCk++H+
  KHN38167.1 266 QIECDFYMKTGECKFGERCKYHHP 289
                 568********************8 PP
6zf-CCCH41.12.9e-13317340427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 ++C+++++tGtCk+G++CkF H+p
  KHN38167.1 317 VICPYYLKTGTCKFGATCKFDHPP 340
                 68********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.002734IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235735IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5734IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8934IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-65885IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1875886IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-96085IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-56384IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-46483IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.014100128IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-10103127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6104128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-6105126IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6177204IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.051177205IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10180203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5181204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4183202IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6263290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413263291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6265291IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10267289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-5269289IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-8313340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286313341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6317340IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-11317340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-6318338IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0016740Molecular Functiontransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MTIYPQRPGE KDCAHYMLTR TCKFGDSCKF DHPFWVPEGG IPDWKEVPIV TSETPPERPG  60
EPDCPYFLKT QRCKFGSKCK FNHPKVSSEN ADVSSGLPER PSEPPCAFYM KTGKCRYGAA  120
CKFHHPKDIQ IQLSNDSSQT VAQTQTNSIM GWATGDTQPI QSLISPSLQN SKGLPVRLGE  180
VDCPFYMKTG SCKYGVTCRY NHPDRNAINP PIAGLGASIF PSSAANLNIG LLNPAVSVYQ  240
AFEPRLSNPM SQVGIADTIY PQRPGQIECD FYMKTGECKF GERCKYHHPI DRSAPSLSKQ  300
ATVKLTPAGL PRREGAVICP YYLKTGTCKF GATCKFDHPP PGEVMEMAKS QGTSANGGEA  360
EGDEIETSAQ L
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38167.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352781e-82AC235278.1 Glycine max strain Williams 82 clone GM_WBb0048F23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028244851.10.0zinc finger CCCH domain-containing protein 37-like
SwissprotQ941Q31e-160C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A445JIX00.0A0A445JIX0_GLYSO; Zinc finger CCCH domain-containing protein 37
STRINGGLYMA08G25050.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-162floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]