PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38250.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 231aa    MW: 25436.8 Da    PI: 5.5595
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38250.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71e-1149832155
         AP2 21 dpseng....krkrfslgkfgtaeeAakaaiaarkkleg 55
                     g    ++ r++lg+f+taeeAa+a++aa++ l+g
  KHN38250.1 49 R----GdqrpVKSRVWLGTFDTAEEAARAYDAAARTLRG 83
                4....33346679************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.725191IPR001471AP2/ERF domain
SMARTSM003801.3E-153097IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-194591IPR001471AP2/ERF domain
PfamPF008475.0E-75483IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-125591IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MKGTSPNQKD EEGQWWRSLG DGDGGCERIH FKGASVPGRE EETVGEIRRG DQRPVKSRVW  60
LGTFDTAEEA ARAYDAAART LRGPKAKTNF PPLSPFCYPH PTTDPFFYTG FHDQHHHHNN  120
NNLNNPQRPT SSGMSSTVES FSGPRPPTTT TTTTTTTATP FLTATRRYPR TPPLVPEDCH  180
SDCDSSSSVV DDGDDNIVSS SFRPPLPFDL NALPFDDAAA DDDLRRTALC L
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959791e-161BT095979.1 Soybean clone JCVI-FLGm-20M15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027331442.14e-69ethylene-responsive transcription factor 3
SwissprotQ9SXS84e-28ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLV7BBT05e-67V7BBT0_PHAVU; Uncharacterized protein
STRINGXP_007142329.18e-68(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.19e-08ethylene response factor 7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]