PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38411.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 262aa    MW: 29148.1 Da    PI: 4.2906
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38411.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC391.7e-121693098
       NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                ++adedv +i+  +P l+ska elf+ +l  r++  +     +t++   ++++v+  ++fdfl div +
  KHN38411.1  1 MQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYDITLRRGAKTMNAFHLKQCVQTFNVFDFLKDIVSK 69
                899***************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.1E-18168IPR009072Histone-fold
PfamPF008085.8E-11154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.48E-19171IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MQADEDVGKI AMAVPLLVSK ALELFLQDLC DRTYDITLRR GAKTMNAFHL KQCVQTFNVF  60
DFLKDIVSKV PDLGGSVATG DDHAVTKRRK VAGDDDNDSD EELKRNKKPE PGHSSGRGRG  120
RGRGRGLGGG IRTVDQEMSS HAKCEDDSDV LKQNDNHTQS NESMENVLEP EEVKQSFPVS  180
ELAEVSVRNF DLNLDPDENM DSLDTPTSVP TSSSAKSVSE EKHEEYPGWS LSEMEKMIID  240
PIQLANLNGR IDEDEEDYDE EM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-141552175Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116125RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38411.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518474.10.0dr1-associated corepressor
RefseqXP_028219364.10.0dr1-associated corepressor-like
TrEMBLA0A368UIJ80.0A0A368UIJ8_SOYBN; Uncharacterized protein
TrEMBLA0A445LV150.0A0A445LV15_GLYSO; Dr1-associated corepressor
TrEMBLI1JIU10.0I1JIU1_SOYBN; Uncharacterized protein
STRINGGLYMA02G44500.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-50nuclear factor Y, subunit C11
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]