PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN38524.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 188aa MW: 21124.8 Da PI: 7.404

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN38524.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.2	7.4e-40	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i lq+++ +l+++la +k+ KHN38524.1 12 SCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKD 110 6*********************************************************************************************99987 PP DUF260 100 e 100 + KHN38524.1 111 R 111 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.425	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.9E-39	12	109	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0004088	Molecular Function	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MKGYYEPRSS SSCAACKFLK RRCIPNCIFA PYFRSDECKK FAKVHKVFGA SNVSKILVEV 60 PEEQREDTVN SLAYEAEARL RDPVYGCIGA IALLQRKMVE LQHDLAIAKD RLARYATAAA 120 TATTTPSNST SHDAFFNGHV SLPPFPDFYT CADNFNNNND NFCHTSSSQS SLTRHETVDD 180 FIQIPYIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-47	7	116	6	115	LOB family transfactor Ramosa2.1
5ly0_B	3e-47	7	116	6	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN38524.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235882	0.0	AC235882.2 Glycine max clone GM_WBc0011M13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028217806.1	1e-139	LOB domain-containing protein 21-like
Swissprot	Q9SRL8	1e-61	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A445LUF0	1e-137	A0A445LUF0_GLYSO; LOB domain-containing protein 21
STRING	GLYMA02G43220.2	1e-117	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	2e-62	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]