PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38637.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 328aa    MW: 37639.3 Da    PI: 7.9558
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38637.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-05163182120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 + C++C+k+F+r  n++ H+
  KHN38637.1 163 FACSICSKTFNRYNNMQMHM 182
                 78*****************9 PP
2zf-C2H216.13.2e-05247269123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C +Cgk+F  k + ++H +++
  KHN38637.1 247 FMCRKCGKTFAVKGDWRTHEKNC 269
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.36E-5154186No hitNo description
PROSITE profilePS5015710.45163190IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-5163182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17163185IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-4163182IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
SMARTSM00355190210242IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.47E-6233267No hitNo description
Gene3DG3DSA:3.30.160.607.5E-6243267IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704247267IPR007087Zinc finger, C2H2
SMARTSM0035535247267IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.912267300IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MECNVEDNKN PYLHAPTFIE WLKPCSSPNY SYLNNSNTIS SSSSSSPSSS FSFTHNQFVQ  60
ETIQFLPILS EKKASKDEED QTFDEVKEEK VKQVTVALHI GLPDTSKGHA DDEVVDEKMI  120
FHVKEEEEES SKRSFHGCSF NNNQERRFWI PTPAQILVGP MQFACSICSK TFNRYNNMQM  180
HMWGHGSEFR KGPDSLKGSQ PAAMLRLPCY CCAQGCKNNI NHPRAKPLKD FRTLQTHYKR  240
KHGTKPFMCR KCGKTFAVKG DWRTHEKNCG KLWYCTCGSD FKHKRSLKDH IRSFGKGHKP  300
HPPFEAFEDE KECITTGSDE DEVNAHHT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38637.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959320.0BT095932.1 Soybean clone JCVI-FLGm-20I11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028187990.10.0zinc finger protein WIP3-like
SwissprotQ9SGD11e-122ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A445I4230.0A0A445I423_GLYSO; Zinc finger protein WIP3
STRINGGLYMA11G19060.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-115WIP domain protein 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]