PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38660.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 236aa    MW: 25953.1 Da    PI: 5.3365
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38660.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55e-1663113155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 + ++GVr++   ++Wv+eIr+p     +  r+++g++ t+e+Aa+a++ a ++l g
  KHN38660.1  63 PVFRGVRQRN-GNKWVCEIREPI----KkSRVWVGTYPTPEMAARAHDVAVLALSG 113
                 579****999.9*********72....35*********************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-1163111IPR001471AP2/ERF domain
PROSITE profilePS5103220.33664121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-2864123IPR001471AP2/ERF domain
SMARTSM003802.5E-2564127IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-1964123IPR016177DNA-binding domain
PRINTSPR003679.6E-76576IPR001471AP2/ERF domain
CDDcd000186.14E-2765123No hitNo description
PRINTSPR003679.6E-787103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEFEIINESP ADSTSLSSSS VSPCTPPNPN LLCDSPNPQP NTNTNPSHKR KAGRKKFRET  60
RHPVFRGVRQ RNGNKWVCEI REPIKKSRVW VGTYPTPEMA ARAHDVAVLA LSGTSAKFNF  120
PDSVSLLPLA KSHSAVDIRE AAKAASIEAF IPNTAFSSSH NNSNFGENGN AEDTCLNIGM  180
HDDESETMFF DEEAVYNMPG LLDSMAEGLL ITPPSMKRAM DWDDIGCVID LTLWTN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028187006.11e-176dehydration-responsive element-binding protein 1F-like
TrEMBLK7LQ791e-175K7LQ79_SOYBN; Uncharacterized protein
STRINGGLYMA11G19341.11e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-50C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]