PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38899.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 192aa    MW: 22597.8 Da    PI: 9.0062
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38899.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.2e-27959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +ri+n++ rqvtfskRr+g++KKA+EL +LCda+v ++ifsstgklyey+s
  KHN38899.1  9 ERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYAS 59
                69***********************************************86 PP
2K-box75.31.6e-2579170798
       K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 + + e++ + +q+e++ L ++++nLq+++R+l+Ge+L  L++++Lq Le+qLe sl+ +R kK+++l+++i+el +k + + +en +L kk+
  KHN38899.1  79 QMNPESEVKFWQREAEILTQQLQNLQENHRQLMGEQLYGLTVRNLQDLENQLELSLQGVRMKKEQILKDEIQELNRKGNLIFQENVELYKKV 170
                 3378999*********************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.992161IPR002100Transcription factor, MADS-box
CDDcd002651.56E-43277No hitNo description
SuperFamilySSF554553.27E-33292IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-28323IPR002100Transcription factor, MADS-box
PfamPF003194.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-283859IPR002100Transcription factor, MADS-box
PfamPF014863.9E-2482170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.12986176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGRGKIVIER IDNSTSRQVT FSKRRKGLIK KAKELAILCD AQVGLVIFSS TGKLYEYAST  60
SMKSLIERYN TCKEEHHHQM NPESEVKFWQ REAEILTQQL QNLQENHRQL MGEQLYGLTV  120
RNLQDLENQL ELSLQGVRMK KEQILKDEIQ ELNRKGNLIF QENVELYKKV NLNHQEHTQH  180
NYATIDLYSL RP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-22183183MEF2C
5f28_B2e-22183183MEF2C
5f28_C2e-22183183MEF2C
5f28_D2e-22183183MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38899.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534252.11e-120MADS-box transcription factor 23
RefseqXP_006587584.11e-120MADS-box transcription factor 23
RefseqXP_028248468.11e-120MADS-box transcription factor 23-like isoform X1
RefseqXP_028248469.11e-120MADS-box transcription factor 23-like isoform X1
SwissprotQ6EP493e-88MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0R0LEE61e-121A0A0R0LEE6_SOYBN; Uncharacterized protein
STRINGGLYMA09G33451.11e-120(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-89AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]