PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38952.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 800aa    MW: 88993.8 Da    PI: 5.9158
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38952.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-2086141156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  KHN38952.1  86 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMK 141
                 688899***********************************************998 PP
2START150.21.9e-472865102206
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv............dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                 la + ++elvk+ + +ep+W +s   e + evl  +e ++              ++ea+r++ vv+m++++lv  +ld   +W e ++    +a+t++ 
  KHN38952.1 286 LAASSMAELVKMCQTNEPLWIRST--ESEREVLNFEEHARMfawpqnlkhrseLRTEASRDTSVVIMNSVTLVDAFLDAQ-KWMELFPtivsRAKTVQI 381
                 78899*******************..8888888777776668888999***9****************************.9*999999999******* PP

                 ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
       START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                 issg      g+lqlm+ae+q+lsplv+ R+  f+Ry++q  ++g+w+ivd  vds  ++  ++s+ R  ++ Sg++i++++ng+s+vtwveh+ ++++
  KHN38952.1 382 ISSGasglasGTLQLMYAEFQVLSPLVStRETHFLRYCQQnAEEGTWAIVDFPVDSFHQNF-HPSYPRYCRRSSGCVIQDMPNGYSRVTWVEHAKVEEK 479
                 ********************************************************99999.9************************************ PP

                 XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 176 lphwllrslvksglaegaktwvatlqrqcek 206
                  +h+++   v sg+a+ga++w+  lqrqce+
  KHN38952.1 480 PVHQIFCNYVYSGMAFGAQRWLGVLQRQCER 510
                 *****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.25E-1974144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-2180148IPR009057Homeodomain-like
PROSITE profilePS5007116.92583143IPR001356Homeobox domain
SMARTSM003898.8E-1984147IPR001356Homeobox domain
CDDcd000863.64E-1886144No hitNo description
PfamPF000467.3E-1886141IPR001356Homeobox domain
PROSITE patternPS000270118141IPR017970Homeobox, conserved site
PROSITE profilePS5084843.324276513IPR002913START domain
SuperFamilySSF559611.06E-31277512No hitNo description
CDDcd088751.30E-113280509No hitNo description
SMARTSM002341.1E-31285510IPR002913START domain
PfamPF018521.0E-39286510IPR002913START domain
Gene3DG3DSA:3.30.530.203.1E-5342473IPR023393START-like domain
SuperFamilySSF559612.2E-19537706No hitNo description
SuperFamilySSF559612.2E-19736776No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MYGDCQVMSS MGGNVVVNPD TLFSSSIQNS SFNFIPTMPF QPFPSMKEED GILRGKEEIE  60
SGSGSEQLVE DKSGNEQESH EQPTKKKRYH RHTARQIQEM EALFKECPHP DDKQRLKLSH  120
ELGLKPRQVK FWFQNRRTQM KAQQDRADNV ILRAENESLK SENYRLQAAL RNVICPNCGG  180
PCIMGADMGL DEHQVRIENA RLREELERVC CLTTRYTGRP IQTMATGPTL MAPSLDLDMS  240
IYPRHFADTI APCTEMIPVP MLPPEASPFS EGGILMEEEK SLTLELAASS MAELVKMCQT  300
NEPLWIRSTE SEREVLNFEE HARMFAWPQN LKHRSELRTE ASRDTSVVIM NSVTLVDAFL  360
DAQKWMELFP TIVSRAKTVQ IISSGASGLA SGTLQLMYAE FQVLSPLVST RETHFLRYCQ  420
QNAEEGTWAI VDFPVDSFHQ NFHPSYPRYC RRSSGCVIQD MPNGYSRVTW VEHAKVEEKP  480
VHQIFCNYVY SGMAFGAQRW LGVLQRQCER VASLMARNIS DLGAIPSPEA RKNLMKLAQR  540
MIKTFSLNMS TSGGQSWTAI SDSPEDTVRI TTRKITEPGQ PNGVILSAVS TTWLPYSHTK  600
VFDLLRDERR RSQMDALSNG NSLNEVAHIA NGSHPGNCIS LLRINVASNS SQNVELMLQE  660
NCTDQSGSIV VYTTIDVDSI QLAMSGEDPS CIALLPQGFK IVPMSSPPNN VDTPIIDAAT  720
NSSSEPPPSL NNNNSGGCLL TMGLQVLAST IPSAKLNLSS VTAINNHLCN TLHQIEAALS  780
SSSSHENGNG SFLCTEPTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38952.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-145AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587604.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLK7LF400.0K7LF40_SOYBN; Uncharacterized protein
STRINGGLYMA09G34061.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7