PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN38983.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 361aa MW: 40500.9 Da PI: 7.0681

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN38983.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.5e-17	45	92	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde l++++++ G g+W+t +++ g+ R++k+c++rw +yl KHN38983.1 45 RGPWTPEEDEVLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 92 89****************************99**********97 PP
2	Myb_DNA-binding	46.5	8.4e-15	103	143	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l KHN38983.1 103 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 143 89*************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.1E-22	36	94	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.743	40	92	IPR017930	Myb domain
SuperFamily	SSF46689	8.07E-29	42	139	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-12	44	94	IPR001005	SANT/Myb domain
Pfam	PF00249	4.6E-15	45	92	IPR001005	SANT/Myb domain
CDD	cd00167	1.42E-10	47	92	No hit	No description
PROSITE profile	PS51294	24.404	93	147	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.5E-24	95	148	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-13	97	145	IPR001005	SANT/Myb domain
CDD	cd00167	1.42E-11	103	143	No hit	No description
Pfam	PF00249	1.4E-13	103	143	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MRNPSLPTLA TTKTKVKNNS NKSTNNNNNI GTNYSPCCNN VGLKRGPWTP EEDEVLANYI 60 NKEGEGRWRT LPKRAGLLRC GKSCRLRWMN YLRPSVKRGH IAPDEEDLIL RLHRLLGNRW 120 SLIAGRIPGR TDNEIKNYWN THLSKKLINQ GIDPRTHKPL NPPSIAVPSS STTSTIPPSK 180 PPPVIITNNN INPFHHDLTN MFNQGVHLNH LGQHHQPPPL SNPCDNHNPV PAAATDDVSA 240 MGFMDNNNED CNNDGININY YSDDVFSSFL NSLINDDAFE AQQQQHHVQT EIPTPSERSI 300 NPLPCDDRVD DHHLGSITTA SASQGYDDEL GVLWESPLVS ATFSQHVNDH ITKRVHDHHN 360 Q

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MRNPSLPTLA TTKTKVKNNS NKSTNNNNNI GTNYSPCCNN VGLKRGPWTP EEDEVLANYI  60
NKEGEGRWRT LPKRAGLLRC GKSCRLRWMN YLRPSVKRGH IAPDEEDLIL RLHRLLGNRW  120
SLIAGRIPGR TDNEIKNYWN THLSKKLINQ GIDPRTHKPL NPPSIAVPSS STTSTIPPSK  180
PPPVIITNNN INPFHHDLTN MFNQGVHLNH LGQHHQPPPL SNPCDNHNPV PAAATDDVSA  240
MGFMDNNNED CNNDGININY YSDDVFSSFL NSLINDDAFE AQQQQHHVQT EIPTPSERSI  300
NPLPCDDRVD DHHLGSITTA SASQGYDDEL GVLWESPLVS ATFSQHVNDH ITKRVHDHHN  360
Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-24	43	147	2	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	1e-24	43	147	2	105	C-Myb DNA-Binding Domain
1msf_C	1e-24	43	147	2	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN38983.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB597932	0.0	AB597932.1 Glycine max W2 mRNA for R2R3 MYB transcription factor, complete cds, cultivar: Harosoy.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001241492.1	0.0	R2R3 MYB transcription factor W2
Swissprot	Q38850	8e-81	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A0B2S2U4	0.0	A0A0B2S2U4_GLYSO; Transcription repressor MYB5
TrEMBL	F5HQF1	0.0	F5HQF1_SOYBN; R2R3 MYB transcription factor
STRING	GLYMA14G24500.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3894	30	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	7e-79	myb domain protein 5

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]