PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN39136.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 372aa MW: 40772.7 Da PI: 7.3413

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN39136.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.2	1.7e-33	191	248	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+ KHN39136.1 191 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPTTVITTYEGQHNHP 248 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.1E-35	175	250	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-29	182	250	IPR003657	WRKY domain
PROSITE profile	PS50811	32.983	185	250	IPR003657	WRKY domain
SMART	SM00774	7.5E-39	190	249	IPR003657	WRKY domain
Pfam	PF03106	8.0E-26	191	248	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MSVEPKELYY QDLVLDHNII NNQHQGTEAG SNTTMYEKHF SSTLIPSVSA AYDSSQAFDP 60 SYMSFTDCLQ GSMDYNSLAT SFGLSPSSSE VFSSVEGNQK PAEGGGDGGG GGGGGSGGSE 120 TLATLNSSIS SSSSEAGAEE DSGKSKKERQ VKTEEGGENS KKGNKEKKKG EKKQKEPRFA 180 FMTKSEVDHL EDGYRWRKYG QKAVKNSPYP RSYYRCTTQK CTVKKRVERS FQDPTTVITT 240 YEGQHNHPVP TSLRGNAAAG MFTPSSLLAT PTHPLAAGSN FPQDLFLHMH YPRHHHQYHH 300 IHNNLFATQS MTNATTATTT TTTATIAPSS FYSSYNNINN SLLNNQFLPP EYGLLQDIVP 360 SMLHNKSHHN QN

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MSVEPKELYY QDLVLDHNII NNQHQGTEAG SNTTMYEKHF SSTLIPSVSA AYDSSQAFDP  60
SYMSFTDCLQ GSMDYNSLAT SFGLSPSSSE VFSSVEGNQK PAEGGGDGGG GGGGGSGGSE  120
TLATLNSSIS SSSSEAGAEE DSGKSKKERQ VKTEEGGENS KKGNKEKKKG EKKQKEPRFA  180
FMTKSEVDHL EDGYRWRKYG QKAVKNSPYP RSYYRCTTQK CTVKKRVERS FQDPTTVITT  240
YEGQHNHPVP TSLRGNAAAG MFTPSSLLAT PTHPLAAGSN FPQDLFLHMH YPRHHHQYHH  300
IHNNLFATQS MTNATTATTT TTTATIAPSS FYSSYNNINN SLLNNQFLPP EYGLLQDIVP  360
SMLHNKSHHN QN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-28	180	250	7	77	Probable WRKY transcription factor 4
2lex_A	1e-28	180	250	7	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00440	DAP	Transfer from AT4G18170	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN39136.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-108	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028245161.1	0.0	WRKY transcription factor 28-like isoform X1
Swissprot	Q8VWJ2	1e-71	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A0B2RXG9	0.0	A0A0B2RXG9_GLYSO; Putative WRKY transcription factor 28
STRING	GLYMA08G08720.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2231	34	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	4e-50	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]