PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN39244.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 838aa    MW: 92431.7 Da    PI: 6.437
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN39244.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-181775357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  KHN39244.1 17 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                5679*****************************************************97 PP
2START182.42.5e-571623702205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d + W ++++++++l+v+ ++  g+++l +++l
  KHN39244.1 162 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDQPLWFHDCRAVDVLNVLPTAngGTIELLYMQL 259
                 7899******************************************************.9999999999****************9999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+ +Ry+  l++g++vi+++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s+++ ++
  KHN39244.1 260 YAPTTLAPaRDFWLLRYTSVLEDGSLVICERSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQ 358
                 ***************************************9988899***************************************************** PP

                 HHHHHHTXXXXX CS
       START 194 ktwvatlqrqce 205
                 kt++a+l+++++
  KHN39244.1 359 KTTMAALRHLRQ 370
                 *******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5641276IPR001356Homeobox domain
SMARTSM003891.1E-151480IPR001356Homeobox domain
SuperFamilySSF466891.41E-161678IPR009057Homeodomain-like
CDDcd000861.31E-161777No hitNo description
PfamPF000465.8E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-181975IPR009057Homeodomain-like
CDDcd146862.37E-669108No hitNo description
PROSITE profilePS5084824.995152366IPR002913START domain
CDDcd088751.39E-79156371No hitNo description
Gene3DG3DSA:3.30.530.209.4E-23161367IPR023393START-like domain
SMARTSM002341.3E-42161371IPR002913START domain
SuperFamilySSF559612.75E-38161371No hitNo description
PfamPF018527.3E-55162370IPR002913START domain
SuperFamilySSF559614.62E-5398492No hitNo description
SuperFamilySSF559614.62E-5522597No hitNo description
PfamPF086703.4E-50695837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MSCKDGSRNG IGMDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKESS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRQH  120
TQITTQATKD TNCESVVTSG QQHNLITQHP PRDASPAGLL SIAEETLAEF LSKATGTAVE  180
WVQMPGMKPG PDSIGIVAIS HGCTGVAARA CGLVGLEPTR VAEILKDQPL WFHDCRAVDV  240
LNVLPTANGG TIELLYMQLY APTTLAPARD FWLLRYTSVL EDGSLVICER SLKNTQNGPS  300
MPPVQHFVRA EMLPSGYLIR PCEGGGSIIH IVDHMDLEPW SVPEVLRPLY ESSTVLAQKT  360
TMAALRHLRQ ISHEVSQSNV TGWGRRPAAL RALSQRLSRG FNEALNGFTD EGWTTIGNDG  420
VDDVTILVNS SPDKLMGLNL SFANGFPSVS NAVLCAKASM LLQNVPPAIL LRFLREHRSE  480
WADNNMDAYT AAAIKVGPCS LSGSRVGNYG GQVILPLAHT IEHEEFLEVI KLEGIAHSPE  540
DTIMPREMFL LQLCSGMDEN AVGTCAELIS APIDASFADD APLLPSGFRI IPLESGKEAS  600
SPNRTLDLAS ALDVGPSGNR ASNGCANSSC MRSVMTIAFE FAFESHMQEH VASMARQYVR  660
SIISSVQRVA LALSPSHLSS HAGLRSPLGT PEAQTLAHWI CNSYRCYLGV ELLKSNNEGN  720
ESLLKSLWHH SDAILCCTLK ALPVFTFSNQ AGLDMLETTL VALQDITLEK IFDDHGRKIL  780
FSEFPQIIQQ GFACLQGGIC LSSMGRPVSY ERVVAWKVLN EEENAHCICF MFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN39244.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530109.10.0homeobox-leucine zipper protein ATHB-15
RefseqXP_028238900.10.0homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A445JQZ30.0A0A445JQZ3_GLYSO; Homeobox-leucine zipper protein ATHB-15 isoform D
STRINGGLYMA07G01940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]