PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN39287.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 211aa MW: 22748 Da PI: 7.7322

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN39287.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.9	5.9e-40	17	77	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds+ntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rk k+s KHN39287.1 17 EQEQLKCPRCDSNNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKTTKRS 77 57899***************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	13	69	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.1E-33	19	75	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.366	21	75	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	23	59	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MQDPTAFQGV KPPQFPEQEQ LKCPRCDSNN TKFCYYNNYN LSQPRHFCKN CRRYWTKGGA 60 LRNIPVGGGS RKTTKRSSST LSKRSSAPSS SSAVSDPDPT RICTNPVDQD QRVLNIGGGS 120 FSSLLASSGH FGTLLEGLNP SGSGLKMGEF VEGVSSDPGL NLDSGLNPDL QVQSNENSES 180 FLGLQNGDSS CWNGTHGWSD LAIYTPGPSF Q

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN39287.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235904	0.0	AC235904.2 Glycine max clone GM_WBc0179J02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003529737.1	1e-154	dof zinc finger protein DOF3.1
Refseq	XP_028238849.1	1e-154	dof zinc finger protein DOF3.1-like
Swissprot	O82155	6e-44	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A445JQM7	1e-153	A0A445JQM7_GLYSO; Dof zinc finger protein DOF1.7
TrEMBL	K7KYZ6	1e-153	K7KYZ6_SOYBN; Uncharacterized protein
STRING	GLYMA07G01461.1	1e-154	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6181	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-37	DOF zinc finger protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]