PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN39602.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 463aa    MW: 53187 Da    PI: 9.6058
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN39602.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.2e-08435456426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   Cr++ar G C yGd+CkF H+
  KHN39602.1 435 QVCRHYAR-GRCYYGDNCKFLHD 456
                 57******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689065.68E-880125No hitNo description
Gene3DG3DSA:1.10.720.309.2E-980125IPR003034SAP domain
PROSITE profilePS5080010.16690124IPR003034SAP domain
PfamPF020371.2E-990124IPR003034SAP domain
SMARTSM005132.9E-490124IPR003034SAP domain
SuperFamilySSF902291.7E-7430456IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.934431458IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-6432457IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-7435458IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5435456IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MATKNLPMEL HEITTEFEGS DPDSEWDDSK EDPDFDLLEE THSKFSILSL KHKAKARVVE  60
DKGLGEEVNA SAHDGENFQK VQKLIQVGPL EKLKVDECKL YLRKNGLRLT GNKDTLIQRI  120
KEHLDILNGG EKKYPPSSFV LNCKGDACTG DVVLFEQNVY EMFNIASRSA SGPPCGKRIV  180
AGRIVKESYG AAKQQHTFTI EVLWSKGEKP LPPLYPLLIK GRNLYRLKTL RQKWEDEAKR  240
QKILMEKHSR GSLAREDREA RMQEKEKRKK IKENRVSKKD SARNQSQSNS HITRPQYQPQ  300
ETNVPINPEK PEFPSRNSGL SANIRKETSS IVHKPAAVTG HHVDSKTLGR TSFTDNMHNQ  360
QAWSTGDCRN ISDIGHMRRG ADHSAYYNYG DSHFREKPTV ILKYHHHYHH RMPLANANHS  420
QQVLPDRESY DKQKQVCRHY ARGRCYYGDN CKFLHDLRDK GNV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN39602.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150422e-48AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548373.10.0zinc finger CCCH domain-containing protein 62 isoform X1
RefseqXP_028206737.10.0zinc finger CCCH domain-containing protein 62-like isoform X1
TrEMBLA0A445GCS30.0A0A445GCS3_GLYSO; Zinc finger CCCH domain-containing protein 62
TrEMBLK7MEJ20.0K7MEJ2_SOYBN; Uncharacterized protein
STRINGGLYMA16G01296.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116522224
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]