PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN39787.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 420aa    MW: 45959.5 Da    PI: 7.3395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN39787.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09221268455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  KHN39787.1 221 SHSLAERVRREKISERMKYLQDLVPGC----NKVAGKAGMLDEIINYVQSLQ 268
                 8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.64E-10215272No hitNo description
SuperFamilySSF474598.24E-17215286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.37217267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17217284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-6221268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-10223273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MLHCLNTSGN LGATCSDMTV LERQREATIK WQQHLQNNQP PYLTDFNVNV NAVFSSSSSS  60
SQSQGLVMNI CADSALGEVL THSVKPDPGV WPEFDAGFGS SSGFLPTISP TCSRGGDLVS  120
PKENMASAKE NTKKRKPQNS KVVAASDNKQ DKRVKASGEE GESKVTEQTS NKNGKSNANK  180
NNNRETTSAE TSKDNSKGSE VQNQKPEYIH VRARRGQATD SHSLAERVRR EKISERMKYL  240
QDLVPGCNKV AGKAGMLDEI INYVQSLQRQ VEFLSMKLAA VNPRLDFNLD ELFTKEVFPS  300
CAQSFPNIGM PLDMSMSNNP SYLPFNSAQQ LVSCCGGLIN NMGISPPNMG LRRNISTSPV  360
PLPETFLDSS CFTQILPSSN WEGGDFQSLY NVAFDQGRTA SFPSQPFTGL VEASNLKMEM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN39787.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0983030.0BT098303.1 Soybean clone JCVI-FLGm-23G1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340509.10.0basic helix-loop-helix transcription activator CIB1
RefseqXP_028187332.10.0transcription factor HBI1-like isoform X2
TrEMBLA0A445I0C80.0A0A445I0C8_GLYSO; Transcription factor bHLH49 isoform B
TrEMBLI1LJC60.0I1LJC6_SOYBN; Uncharacterized protein
STRINGGLYMA11G12450.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.15e-55cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]